Gene detail information of Glyur000160s00019150.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G05460.10Glycosyl hydrolase family 85
NRXP_004500516.10PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase-like [Cicer arietinum]
COGYP_004771296.14.00E-29endo-beta-N-acetylglucosaminidase [Candidatus Arthromitus sp. SFB-mouse-Japan]
trEMBLtr|I1MYZ6|I1MYZ6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G02770.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001603963147308-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH85


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01227E3.2.1.96 EC:3.2.1.96 Other glycan degradation map00511


Gene Ontology

cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0033925  mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000160s00019150.1PF03644.8Glyco_hydro_851214031.60E-101


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.226
SRR1783600control18.092
SRR1783602moderate drought stress13.366
SRR1811619moderate drought stress13.295

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.448
DRR006520Root Summer glycyrrhizin high producing strain7.300
DRR006521Root Winter glycyrrhizin high producing strain6.311
DRR006522Root Winter glycyrrhizin high producing strain5.993
DRR006523Root Summer glycyrrhizin low producing strain8.302
DRR006524Root Summer glycyrrhizin low producing strain8.332
DRR006525Leaf Summer glycyrrhizin high producing strain37.003
DRR006526Leaf Summer glycyrrhizin high producing strain36.658

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.797
SRR2868004Drought Stress(Tissue:root)21.445
SRR2967015Control (Tissue:root)16.709

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.081
SRR9715740Leave16.514
SRR9715741Leave20.612
SRR9715739Root5.662
SRR9715742Root13.633
SRR9715743Root11.432

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.464
SRR8749028MeJA induced 9h16.404
SRR8749029MeJA induced 9h6.237
SRR8749030Uninduced7.484
SRR8749031Uninduced4.051
SRR8749032Uninduced3.445

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.597
SRR8400027Control-Root22.811

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved