Gene detail information of Glyur000160s00019161.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G42670.1 | 0 | chromatin remodeling 38 |
| NR | XP_006595851.1 | 0 | PREDICTED: SNF2 domain-containing protein CLASSY 2-like isoform X1 [Glycine max] |
| COG | YP_007319492.1 | 9.00E-24 | SNF2-related protein [Fibrella aestuarina BUZ 2] |
| Swissprot | tr|F4K493|CLSY2_ARATH | 0 | SNF2 domain-containing protein CLASSY 2 |
| trEMBL | tr|I1M7Q5|I1M7Q5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G06090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00160 | 167619 | 174313 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10875 | RAD54L, RAD54 | EC:3.6.4.- | Homologous recombination | map03440 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000160s00019161.1 | PF00176.18 | SNF2_N | 686 | 950 | 3.30E-20 |
| Glyur000160s00019161.1 | PF00271.26 | Helicase_C | 1109 | 1185 | 1.90E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.001 |
| SRR1811619 | moderate drought stress | 0.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.029 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.028 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.063 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.013 |
| SRR2967015 | Control (Tissue:root) | 0.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.017 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.212 |
| SRR8749028 | MeJA induced 9h | 0.341 |
| SRR8749029 | MeJA induced 9h | 0.217 |
| SRR8749030 | Uninduced | 0.692 |
| SRR8749031 | Uninduced | 0.281 |
| SRR8749032 | Uninduced | 0.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.000 |