Gene detail

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Gene detail information of Glyur000160s00019174.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G56100.1	0	meristematic receptor-like kinase
NR	KEH28293.1	0	LRR receptor-like kinase [Medicago truncatula]
COG	YP_004775215.1	2.00E-36	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGP9\|IMK3_ARATH	0	Probable leucine-rich repeat receptor-like protein kinase IMK3 (Precursor)
trEMBL	tr\|C4TP24\|C4TP24_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G35710.2}

Sequence

Transcript Sequence

>Glyur000160s00019174.1
ATGGTAAAGCAGAACACGAGTGTGACTTCTAGTTCTACTATACTCTTTGAATATGACTACCCTTGTCAGATTTTACAACCTGGGATGAGAAGTGAAGCTATTTCTGATAGAAAGAAAGAAAGATGGAAGAATGAGTATTGTTTTTTCTGTTGGTGTTTTTGGGCATGGATTCTTCTTCTCCTCNCATGTGTGAACCGAGTTTTGGGTGAAGAAGCGCGTTGGGATGGAGTTGTGGTGACAGAATCAAATCTCATAGCACTCCAAGCATTCAAGCAAGAGTTAATTGATCCAAAAGGAATCTTGAATAGCTGGAATGACAGTGGCTATGGAGCCTGTTCAGGAAACTGGGTTGGTATCAAGTGTGCTAAGGGACAAGTTATTGTAATCCAGCTTCCATGGAAAGGATTAAAGGGTCAAATCACAGACAGAATAGGCCAACTTGTTGGGCTTAGGAAGCTTAGTCTCCATGACAACCAAATTGGTGGTTCAATCCCTTCATCATTGGGGATTCTCCCAAACCTTAGAGGGGTTCAGCTATTCAACAACAAGCTAAAAGGGTCAATCCCTCCTCCTTTAGGTTATTGCCCTTTGCTTCAATCCCTTGACCTTAGTAACAATTTCCTCACTGGAACAATCCCTGATAGTATTTCCAATTCCACTAAGCTTTATTGGCTTAACTTGAGTTTTAATTCTTTTTCTGGTAATTTACCATCTAGCCTAACTCACTCCCTTTCTCTCACTTTCCTTTCCCTTCAACACAACAATCTCTCTGGCTCCCTTAGTCTGAAGAATAATGACTTCCCTAGGCTTCAAAATTTGATCCTTGATCATAACTCCTTCANTGGGAATATTCCTGCTTCTTTGGGAAGTTTAAGACAACTCAGAGAGATTTCTCTAAGTCACAATAAATTTAGTGGTCACATTCCTGCTAGTATTGCAAACATATCCACTCTTAGGAAGCTTGATTTGTCAATGAATAATCTCAGTGGAGAAATTCCAGTTTCCTTTGATGACACTGGAGAACTTAGTCTTAATCTTTTTAATGTTTCTTACAATAACCTCTCAGGTCCTGTTCCCACTCTACTTGCCAAGAGATTTAACTCAAGCTCATTTGTGGGGAATGTTCAACTATGTGGATATAGCTCTTCAACAAGACCATGCCCTTCTTCACCACCAGAAGGAGGAGTCCTTGCTGCTCCACCTTCTGATCAAGTGTTAATGATAACACACCGCCACCATCATAAGAAACTAAGTACCAAAGACATAATTCTCATAGCAGCAGGAGCACTCCTCATAGTCCTGCTAACACTTTGTTGCATCCTTCTCTTCTGCCTGATCAAGAAAAGAGCAACATCAAAGGCAGAAAANGGCCAAGCTGCGGCGAGGGCTTCCCCGGTGAGCACGGAAAAAGGGGTTTCGGTTCCTTCTATTGATGCTGGTGAGGTTGAAGCAGGTGGTGGTGAGGGAGGAGGGAAACTAGTCCATTTTGATGGACCAATGGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCTGAGATAATGGGAAAGAGCACCTATGGAACAGTGTATAAGACTACATTGGAAGATGGGAGTCAAGTTGCTGTGAAGAGATTGAGGGAAAAGATCACTAAAAATCGTGGACCTGAAACAGCCCATATTGATTGGCCAACAAGGATGAAAATAGCACAGGACATAGCTCGTGGCTTGTTTTACCTTCATTCCCACGAGAATATCATACATGGNAACCTCACATCCAGCAATGTCTTGCTTAATGATGATGAGAATTCTACAGATGCCAAAATTGCAGACTTTGGTCTTTCTAGGTTGATGACAACTAGTGCTAATTCCAGCGTGATTGCTACTTCTTTAGCATTGGGATACCGAGCACCAGAGCTCTCAAATCTCAAGAAAGCAAGCACAAAAACTGATATCTATAGTCTTGGTGTTATCTTGTTAGAACTCCTAACTAGGAAATCACCTGGGGTGTCTATGAATGGCTTAGACTTGCCTCAGTGGGTTGCTTCTATTGTCAAAGAAGAGGAGTGGACAAATGAGGTCTTTGATGTGGAGTTGATGAGAGATCATGCATCAATGGTTGGTGTTGATGAGTTGCTAAACACATTGAAGCTTGCTTTGCACTGTGTTGACCCTTCTCCATCAGCAAGACCAGNTGCTCAGCAAGTGCTCCAGCAGCTAGAAGAGATTAGAACAGAACCACAGAGATCAGTTAGTTCTGGGGACGATTTTAACCCCTTGTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00160	259897	262667	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000160s00019174.1	PF08263.7	LRRNT_2	86	121	3.30E-07
Glyur000160s00019174.1	PF00560.28	LRR_1	198	218	0.011
Glyur000160s00019174.1	PF13855.1	LRR_8	268	328	1.10E-06
Glyur000160s00019174.1	PF00069.20	Pkinase	554	732	1.70E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.032
SRR1783600	control	0.032
SRR1783602	moderate drought stress	0.017
SRR1811619	moderate drought stress	0.017

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.123
DRR006520	Root Summer glycyrrhizin high producing strain	0.095
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.082
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.082

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.475
SRR2868004	Drought Stress(Tissue:root)	0.673
SRR2967015	Control (Tissue:root)	0.568

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.088
SRR9715740	Leave	0.035
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.081

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.094
SRR8749028	MeJA induced 9h	0.077
SRR8749029	MeJA induced 9h	0.045
SRR8749030	Uninduced	0.056
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.025

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.021
SRR8400027	Control-Root	0.042