Gene detail information of Glyur000161s00011253.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G49360.1 | 0 | beta-xylosidase 1 |
| NR | XP_004487789.1 | 0 | PREDICTED: beta-D-xylosidase 1-like [Cicer arietinum] |
| COG | YP_004464029.1 | 1.00E-108 | glycoside hydrolase [Mahella australiensis 50-1 BON] |
| Swissprot | tr|Q9FGY1|BXL1_ARATH | 0 | Beta-D-xylosidase 1 (Precursor) |
| trEMBL | tr|G7IMV1|G7IMV1_MEDTR | 0 | Alpha-L-arabinofuranosidase/beta-D-xylosidase {ECO:0000313|EMBL:AES65046.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00161 | 83948 | 89796 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000161s00011253.1 | PF00933.16 | Glyco_hydro_3 | 146 | 334 | 1.90E-40 |
| Glyur000161s00011253.1 | PF01915.17 | Glyco_hydro_3_C | 376 | 624 | 4.10E-41 |
| Glyur000161s00011253.1 | PF14310.1 | Fn3-like | 690 | 753 | 2.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.975 |
| SRR1783600 | control | 20.609 |
| SRR1783602 | moderate drought stress | 19.745 |
| SRR1811619 | moderate drought stress | 19.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.073 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.835 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.176 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.223 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.073 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.398 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.188 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.407 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 115.338 |
| SRR2868004 | Drought Stress(Tissue:root) | 131.283 |
| SRR2967015 | Control (Tissue:root) | 116.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 46.752 |
| SRR9715740 | Leave | 42.298 |
| SRR9715741 | Leave | 72.710 |
| SRR9715739 | Root | 18.455 |
| SRR9715742 | Root | 7.466 |
| SRR9715743 | Root | 9.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.353 |
| SRR8749028 | MeJA induced 9h | 5.461 |
| SRR8749029 | MeJA induced 9h | 0.269 |
| SRR8749030 | Uninduced | 0.309 |
| SRR8749031 | Uninduced | 0.296 |
| SRR8749032 | Uninduced | 0.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.552 |
| SRR8400027 | Control-Root | 21.402 |