Gene detail information of Glyur000161s00011255.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G16920.13.00E-144chitinase-like protein 2
NRXP_003594792.10Endochitinase [Medicago truncatula]
COGYP_003125181.17.00E-31chitinase [Chitinophaga pinensis DSM 2588]
Swissprottr|Q9LSP9|CTL2_ARATH0Chitinase-like protein 2 (Precursor)
trEMBLtr|G7IMU8|G7IMU8_MEDTR0Uncharacterized protein {ECO:0000313|EMBL:AFK46708.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00161109940112270-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH19


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006032  chitin catabolic process

GO:0016998  cell wall macromolecule catabolic process


molecular_function

GO:0004568  chitinase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000161s00011255.1PF00182.14Glyco_hydro_19672932.30E-62


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control30.803
SRR1783600control30.590
SRR1783602moderate drought stress18.580
SRR1811619moderate drought stress18.344

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain55.683
DRR006520Root Summer glycyrrhizin high producing strain54.969
DRR006521Root Winter glycyrrhizin high producing strain0.864
DRR006522Root Winter glycyrrhizin high producing strain0.765
DRR006523Root Summer glycyrrhizin low producing strain58.258
DRR006524Root Summer glycyrrhizin low producing strain58.536
DRR006525Leaf Summer glycyrrhizin high producing strain55.582
DRR006526Leaf Summer glycyrrhizin high producing strain54.831

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)113.193
SRR2868004Drought Stress(Tissue:root)98.138
SRR2967015Control (Tissue:root)87.935

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave47.762
SRR9715740Leave22.141
SRR9715741Leave12.489
SRR9715739Root19.704
SRR9715742Root99.785
SRR9715743Root83.031

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.797
SRR8749028MeJA induced 9h3.786
SRR8749029MeJA induced 9h4.410
SRR8749030Uninduced0.311
SRR8749031Uninduced0.018
SRR8749032Uninduced0.377

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root148.733
SRR8400027Control-Root254.076

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved