Gene detail information of Glyur000161s00011256.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16150.1 | 0 | calmodulin binding;transcription regulators |
| NR | AES65041.2 | 0 | calmodulin-binding transcription activator [Medicago truncatula] |
| Swissprot | tr|O23463|CMTA5_ARATH | 0 | Calmodulin-binding transcription activator 5 |
| trEMBL | tr|G7IMU6|G7IMU6_MEDTR | 0 | Calmodulin-binding transcription activator {ECO:0000313|EMBL:AES65041.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00161 | 115082 | 123332 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | CAMTA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000161s00011256.2 | PF03859.11 | CG-1 | 31 | 146 | 8.40E-49 |
| Glyur000161s00011256.2 | PF00023.25 | Ank | 550 | 581 | 3.10E-08 |
| Glyur000161s00011256.2 | PF00612.22 | IQ | 715 | 733 | 0.2 |
| Glyur000161s00011256.2 | PF00612.22 | IQ | 738 | 757 | 0.00098 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.080 |
| SRR1783600 | control | 15.241 |
| SRR1783602 | moderate drought stress | 25.072 |
| SRR1811619 | moderate drought stress | 24.735 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.908 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.340 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 35.834 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 35.343 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.810 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.838 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.049 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 35.728 |
| SRR2868004 | Drought Stress(Tissue:root) | 44.233 |
| SRR2967015 | Control (Tissue:root) | 49.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 26.866 |
| SRR9715740 | Leave | 19.381 |
| SRR9715741 | Leave | 28.486 |
| SRR9715739 | Root | 4.060 |
| SRR9715742 | Root | 24.563 |
| SRR9715743 | Root | 18.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.374 |
| SRR8749028 | MeJA induced 9h | 14.146 |
| SRR8749029 | MeJA induced 9h | 7.382 |
| SRR8749030 | Uninduced | 10.540 |
| SRR8749031 | Uninduced | 5.868 |
| SRR8749032 | Uninduced | 5.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 47.668 |
| SRR8400027 | Control-Root | 47.925 |