Gene detail

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Gene detail information of Glyur000161s00011257.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02080.1	7.00E-90	secretion-associated RAS super family 2
NR	KHN14662.1	1.23E-133	GTP-binding protein SAR1A [Glycine soja]
COG	YP_001737337.1	6.00E-17	small GTP-binding protein [Candidatus Korarchaeum cryptofilum OPF8]
Swissprot	tr\|O04834\|SAR1A_ARATH	1.00E-132	GTP-binding protein SAR1A
trEMBL	tr\|I1MGG9\|I1MGG9_SOYBN	5.00E-134	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G15330.1}

Sequence

Transcript Sequence

>Glyur000161s00011257.1
GTCACCATTCATCTAACTCTTCAACTCCTAAAATCAAAATAGGCCACGCGATGGCCAGCTACCAGCCTACCAAACCTTGGTCCTGTCCTCCAATGTCCTGTTGGAAAAGGAAAGGGTAATTAAAAAAATTAAAAACAAAAACAAAAGAGAGAAAAAAGAAAAGGGAAAAACAAAAGTTGCATTCCCACCACATGCGTTTACAAGTAACGCTGAACTGGCCACTATATGCCAAGAGAGACAGACAGACACGTGAACTTCTTCTAGGATCTCTGTGGGATCTGCTGTGTGGTGTGTGGTTCCTCCTCATTCCTCTTCCCTGCGATCTGGGACTCCTCTTTCCCCCACCTTCAGATTCAAATAAAAAACACACTTACCCCATTCCTTCTCGAGTTTTGGGTTAAGATCTCAAGATTCTCAACACACATACATACATATATTACCAAAAAATATGTTCNTCTTTGACTGGTTCTATGGCATTCTCGCTTCCCTTGGTCTCTGGCAAAAAGAAGCCAAGATTCTCTTCCTGGGTCTTGATAATGCCGGCAAGACCACCCTNCTTCACATGCTCAAAGACGAGAGATTAGTTCAGCACCAGCCGACCCAACACCCCACTTCGGAGGAACTGAGTATTGGGAAGATCAAGTTTAAGGCTTTTGATTTGGGGGGTCATCAAATTGCTCGCAGAGTCTGGAAAGACTATTATGCAAAGTGTTCACTTCCTGTATGGGGTGCTGGATTTTCAGATGAGGTGGATGCTGTAGTTTACCTGGTCGACGCCTATGACAAAGAGAGGTTTGCAGAATCTAAGAAGGAGCTTGATGCCTTGCTCTCAGATGAAGCCTTGGCAAATGTTCCATTTCTCATTCTAGGCAACAAGATTGACATCCCATATGCGGCTTCGGAAGACGAGCTACGATATCATCTAGGCCTAACCAACTTCACCACGGGCAAAGGGAAGATGAATCTCACGGACTCGAACCTTCGACCTCTTGAAGTGTTCATGTGCAGCATTGTCCGGAAGATGGGGTATGGAGAAGGCTTCCAGTGGCTTTCCCAATATATCAAGTAGAGTTTCAACATCAGTTTTTTGTTCCCCAATTCCCCTGGTCTACTGGCCACTACTGTCTGCAGTTACATCACAAGTGGTTTTTACCTGTTTTTGCTTTTGATTGTGGATTATTTGATACAACTGCAGTAATATTACATGATAAAATTTGTATCTTTAATGATATTTTTTGGGGAAAGTATTCTCCTTTAAAATACTTGATTCTGTTGTAGGAGGGCATGACTGGGCAGAAAAATAAATGTTGAAGAGTCTTTATACACTTTCTTCCTCTTACATATGAATGGAAGCAGAATTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00161	124588	127545	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K07953	SAR1	EC:3.6.5.-	Protein processing in endoplasmic reticulum	map04141
K07953	SAR1	EC:3.6.5.-	Legionellosis	map05134

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0007264 small GTPase mediated signal transduction

cellular_component GO:0005622 intracellular molecular_function GO:0005525 GTP binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000161s00011257.1	PF00025.16	Arf	8	205	2.40E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	73.013
SRR1783600	control	73.427
SRR1783602	moderate drought stress	39.971
SRR1811619	moderate drought stress	39.600

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	53.756
DRR006520	Root Summer glycyrrhizin high producing strain	53.532
DRR006521	Root Winter glycyrrhizin high producing strain	85.867
DRR006522	Root Winter glycyrrhizin high producing strain	83.280
DRR006523	Root Summer glycyrrhizin low producing strain	51.899
DRR006524	Root Summer glycyrrhizin low producing strain	51.909
DRR006525	Leaf Summer glycyrrhizin high producing strain	50.322
DRR006526	Leaf Summer glycyrrhizin high producing strain	50.234

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	91.378
SRR2868004	Drought Stress(Tissue:root)	71.640
SRR2967015	Control (Tissue:root)	61.126

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	90.092
SRR9715740	Leave	76.597
SRR9715741	Leave	85.268
SRR9715739	Root	47.912
SRR9715742	Root	52.818
SRR9715743	Root	48.157

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	69.578
SRR8749028	MeJA induced 9h	82.762
SRR8749029	MeJA induced 9h	78.471
SRR8749030	Uninduced	67.524
SRR8749031	Uninduced	50.435
SRR8749032	Uninduced	40.124

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	99.289
SRR8400027	Control-Root	100.922