Gene detail information of Glyur000161s00011259.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G16950.20lipoamide dehydrogenase 1
NRAHC70256.10lipoamide dehydrogenase [Trifolium pratense]
COGYP_007124726.10dihydrolipoamide dehydrogenase [Microcoleus sp. PCC 7113]
Swissprottr|A8MS68|PLPD1_ARATH0Dihydrolipoyl dehydrogenase 1, chloroplastic (Precursor)
trEMBLtr|V9TMP0|V9TMP0_TRIPR0Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00161130654136236-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00382DLD, lpd, pdhD EC:1.8.1.4 Carbon metabolism map01200
Glycolysis / Gluconeogenesismap00010
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Propanoate metabolismmap00640
Glycine, serine and threonine metabolismmap00260
Valine, leucine and isoleucine degradationmap00280


Gene Ontology

biological_process

GO:0045454  cell redox homeostasis

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0016668  oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor

GO:0050660  flavin adenine dinucleotide binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000161s00011259.1PF07992.9Pyr_redox_2914091.10E-33
Glyur000161s00011259.1PF00070.22Pyr_redox2613382.60E-15
Glyur000161s00011259.1PF02852.17Pyr_redox_dim4415083.00E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.407
SRR1783600control23.219
SRR1783602moderate drought stress14.259
SRR1811619moderate drought stress14.183

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.852
DRR006520Root Summer glycyrrhizin high producing strain13.351
DRR006521Root Winter glycyrrhizin high producing strain7.017
DRR006522Root Winter glycyrrhizin high producing strain6.697
DRR006523Root Summer glycyrrhizin low producing strain11.293
DRR006524Root Summer glycyrrhizin low producing strain11.270
DRR006525Leaf Summer glycyrrhizin high producing strain22.423
DRR006526Leaf Summer glycyrrhizin high producing strain21.825

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.697
SRR2868004Drought Stress(Tissue:root)15.726
SRR2967015Control (Tissue:root)17.229

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.632
SRR9715740Leave24.661
SRR9715741Leave18.712
SRR9715739Root8.591
SRR9715742Root17.239
SRR9715743Root13.716

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.240
SRR8749028MeJA induced 9h7.746
SRR8749029MeJA induced 9h5.031
SRR8749030Uninduced6.580
SRR8749031Uninduced2.687
SRR8749032Uninduced1.482

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.243
SRR8400027Control-Root33.047

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved