Gene detail information of Glyur000161s00011265.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G49430.10WD40/YVTN repeat-like-containing domain;Bromodomain
NRXP_006597706.10PREDICTED: PH-interacting protein-like isoform X1 [Glycine max]
COGYP_001658758.14.00E-29WD repeat-containing protein [Microcystis aeruginosa NIES-843]
Swissprottr|Q3Y8L7|DAW1_CHLRE1.00E-21Dynein assembly factor with WDR repeat domains 1
trEMBLtr|K7MBB4|K7MBB4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G15220.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00161169530182695-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000161s00011265.1PF00400.27WD402342694.60E-08
Glyur000161s00011265.1PF00400.27WD402753107.00E-08
Glyur000161s00011265.1PF00400.27WD403163563.00E-10
Glyur000161s00011265.1PF00400.27WD403894171.60E-05
Glyur000161s00011265.1PF00400.27WD404354930.02
Glyur000161s00011265.1PF00400.27WD405706080.02
Glyur000161s00011265.1PF00439.20Bromodomain168317341.20E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.127
SRR1783600control6.127
SRR1783602moderate drought stress7.135
SRR1811619moderate drought stress7.062

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.592
DRR006520Root Summer glycyrrhizin high producing strain8.444
DRR006521Root Winter glycyrrhizin high producing strain9.830
DRR006522Root Winter glycyrrhizin high producing strain9.631
DRR006523Root Summer glycyrrhizin low producing strain8.772
DRR006524Root Summer glycyrrhizin low producing strain8.822
DRR006525Leaf Summer glycyrrhizin high producing strain10.672
DRR006526Leaf Summer glycyrrhizin high producing strain10.754

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.168
SRR2868004Drought Stress(Tissue:root)16.965
SRR2967015Control (Tissue:root)16.504

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.389
SRR9715740Leave16.569
SRR9715741Leave16.769
SRR9715739Root0.832
SRR9715742Root7.355
SRR9715743Root5.861

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.932
SRR8749028MeJA induced 9h16.087
SRR8749029MeJA induced 9h6.880
SRR8749030Uninduced9.796
SRR8749031Uninduced7.712
SRR8749032Uninduced5.451

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.515
SRR8400027Control-Root17.341

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved