Gene detail information of Glyur000161s00011267.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16260.1 | 6.00E-110 | Glycosyl hydrolase superfamily protein |
| NR | ABD32327.1 | 0 | Glycoside hydrolase, family 17 [Medicago truncatula] |
| Swissprot | tr|Q03467|E13B_PEA | 0 | Glucan endo-1,3-beta-glucosidase (Precursor) |
| trEMBL | tr|Q2HU14|Q2HU14_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK39879.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00161 | 196293 | 214231 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000161s00011267.1 | PF00332.13 | Glyco_hydro_17 | 37 | 351 | 3.70E-131 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 37.770 |
| SRR1783600 | control | 37.802 |
| SRR1783602 | moderate drought stress | 48.124 |
| SRR1811619 | moderate drought stress | 47.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.034 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.032 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 142.425 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 138.211 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.794 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.964 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 115.513 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 116.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 106.258 |
| SRR2868004 | Drought Stress(Tissue:root) | 151.776 |
| SRR2967015 | Control (Tissue:root) | 264.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 122.524 |
| SRR9715740 | Leave | 84.900 |
| SRR9715741 | Leave | 98.291 |
| SRR9715739 | Root | 216.416 |
| SRR9715742 | Root | 149.479 |
| SRR9715743 | Root | 161.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 331.608 |
| SRR8749028 | MeJA induced 9h | 1878.200 |
| SRR8749029 | MeJA induced 9h | 468.279 |
| SRR8749030 | Uninduced | 1789.707 |
| SRR8749031 | Uninduced | 1813.144 |
| SRR8749032 | Uninduced | 882.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 118.339 |
| SRR8400027 | Control-Root | 74.585 |