Gene detail information of Glyur000161s00011280.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G03450.1 | 5.00E-50 | RGA-like 2 |
| NR | XP_003594755.1 | 0 | DELLA protein RGL2 [Medicago truncatula] |
| Swissprot | tr|Q8GXW1|RGL2_ARATH | 2.00E-54 | DELLA protein RGL2 |
| trEMBL | tr|A2Q2X9|A2Q2X9_MEDTR | 0 | GRAS transcription factor {ECO:0000313|EMBL:ABN07979.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00161 | 251093 | 252928 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000161s00011280.1 | PF03514.9 | GRAS | 236 | 609 | 1.30E-90 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.039 |
| SRR1783600 | control | 0.040 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.150 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.117 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.301 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.301 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.051 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.122 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.186 |
| SRR2967015 | Control (Tissue:root) | 4.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.036 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.066 |
| SRR9715743 | Root | 0.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.035 |
| SRR8749031 | Uninduced | 0.084 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.934 |
| SRR8400027 | Control-Root | 0.252 |