Gene detail information of Glyur000161s00011282.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G17000.11.00E-106ubiquitin-conjugating enzyme 32
NRXP_007147358.10hypothetical protein PHAVU_006G117400g [Phaseolus vulgaris]
Swissprottr|Q9LSP7|UBC32_ARATH6.00E-134Ubiquitin-conjugating enzyme E2 32
trEMBLtr|V7BN27|V7BN27_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW19352.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00161257782260819+


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10578UBE2J1, NCUBE1, UBC6 EC:2.3.2.23 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
Parkinson's diseasemap05012


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000161s00011282.1PF00179.21UQ_con141254.50E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control29.165
SRR1783600control29.196
SRR1783602moderate drought stress18.913
SRR1811619moderate drought stress18.898

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain84.611
DRR006520Root Summer glycyrrhizin high producing strain84.985
DRR006521Root Winter glycyrrhizin high producing strain18.940
DRR006522Root Winter glycyrrhizin high producing strain17.997
DRR006523Root Summer glycyrrhizin low producing strain115.629
DRR006524Root Summer glycyrrhizin low producing strain117.864
DRR006525Leaf Summer glycyrrhizin high producing strain42.622
DRR006526Leaf Summer glycyrrhizin high producing strain42.847

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)60.922
SRR2868004Drought Stress(Tissue:root)93.875
SRR2967015Control (Tissue:root)83.989

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave109.468
SRR9715740Leave62.572
SRR9715741Leave99.627
SRR9715739Root47.528
SRR9715742Root76.158
SRR9715743Root67.897

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h112.015
SRR8749028MeJA induced 9h124.312
SRR8749029MeJA induced 9h101.930
SRR8749030Uninduced134.959
SRR8749031Uninduced87.653
SRR8749032Uninduced102.584

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root54.652
SRR8400027Control-Root65.322

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved