Gene detail information of Glyur000162s00009898.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G25170.10chromatin remodeling factor CHD3 (PICKLE)
NRKHN07035.10CHD3-type chromatin-remodeling factor PICKLE [Glycine soja]
COGYP_007297659.13.00E-68DNA/RNA helicase, superfamily II, SNF2 family [Thermoanaerobacterium thermosaccharolyticum M0795]
Swissprottr|Q9S775|PKL_ARATH0CHD3-type chromatin-remodeling factor PICKLE
trEMBLtr|I1K8P5|I1K8P5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G06720.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001625571572903-


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11643CHD4, MI2B EC:3.6.4.12 Viral carcinogenesis map05203


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0008270  zinc ion binding

GO:0016818  hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000162s00009898.1PF00628.24PHD53951.20E-08
Glyur000162s00009898.1PF00385.19Chromo1862335.40E-15
Glyur000162s00009898.1PF00176.18SNF2_N2825546.70E-66
Glyur000162s00009898.1PF00271.26Helicase_C6036814.20E-13
Glyur000162s00009898.1PF06465.8DUF10878018631.70E-17
Glyur000162s00009898.1PF06461.6DUF108688810254.30E-51
Glyur000162s00009898.1PF08074.6CHDCT2103610703.10E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control35.785
SRR1783600control35.741
SRR1783602moderate drought stress49.625
SRR1811619moderate drought stress49.365

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain30.247
DRR006520Root Summer glycyrrhizin high producing strain30.088
DRR006521Root Winter glycyrrhizin high producing strain31.667
DRR006522Root Winter glycyrrhizin high producing strain30.641
DRR006523Root Summer glycyrrhizin low producing strain35.339
DRR006524Root Summer glycyrrhizin low producing strain35.690
DRR006525Leaf Summer glycyrrhizin high producing strain21.126
DRR006526Leaf Summer glycyrrhizin high producing strain20.998

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)57.678
SRR2868004Drought Stress(Tissue:root)57.218
SRR2967015Control (Tissue:root)60.172

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave28.297
SRR9715740Leave30.540
SRR9715741Leave34.210
SRR9715739Root2.678
SRR9715742Root25.113
SRR9715743Root21.611

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h57.399
SRR8749028MeJA induced 9h86.513
SRR8749029MeJA induced 9h50.198
SRR8749030Uninduced59.540
SRR8749031Uninduced60.351
SRR8749032Uninduced44.787

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root55.550
SRR8400027Control-Root53.443

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved