Gene detail information of Glyur000162s00009908.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G25150.10TBP-associated factor 5
NRAES73552.20TBP-associated factor 5 [Medicago truncatula]
COGYP_007092635.12.00E-52WD-40 repeat-containing protein [Chroococcidiopsis thermalis PCC 7203]
Swissprottr|Q6S7B0|TAF5_ARATH0Transcription initiation factor TFIID subunit 5
trEMBLtr|G7J9V2|G7J9V2_MEDTR0TBP-associated factor 5 {ECO:0000313|EMBL:AES73552.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00162144571149978-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0005515  protein binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000162s00009908.1PF04494.10TFIID_90kDa531882.70E-47
Glyur000162s00009908.1PF00400.27WD403493810.0092
Glyur000162s00009908.1PF00400.27WD404174517.30E-10
Glyur000162s00009908.1PF00400.27WD404614933.70E-10
Glyur000162s00009908.1PF00400.27WD404985352.00E-11
Glyur000162s00009908.1PF00400.27WD405395772.00E-10
Glyur000162s00009908.1PF00400.27WD405816191.90E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.830
SRR1783600control22.768
SRR1783602moderate drought stress20.795
SRR1811619moderate drought stress21.041

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.452
DRR006520Root Summer glycyrrhizin high producing strain25.388
DRR006521Root Winter glycyrrhizin high producing strain24.146
DRR006522Root Winter glycyrrhizin high producing strain23.648
DRR006523Root Summer glycyrrhizin low producing strain22.438
DRR006524Root Summer glycyrrhizin low producing strain22.104
DRR006525Leaf Summer glycyrrhizin high producing strain14.074
DRR006526Leaf Summer glycyrrhizin high producing strain13.715

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)31.209
SRR2868004Drought Stress(Tissue:root)34.095
SRR2967015Control (Tissue:root)38.157

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.865
SRR9715740Leave19.616
SRR9715741Leave21.565
SRR9715739Root5.549
SRR9715742Root19.160
SRR9715743Root16.073

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h30.557
SRR8749028MeJA induced 9h32.115
SRR8749029MeJA induced 9h19.060
SRR8749030Uninduced12.932
SRR8749031Uninduced3.773
SRR8749032Uninduced5.296

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root39.033
SRR8400027Control-Root38.035

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved