Gene detail information of Glyur000162s00009936.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G24790.11.00E-62CONSTANS-like 3
NRAGZ15419.11.78E-139constans [Phaseolus vulgaris]
Swissprottr|Q940T9|COL4_ARATH9.00E-92Zinc finger protein CONSTANS-LIKE 4
trEMBLtr|U5TZJ5|U5TZJ5_PHAVU7.00E-140Constans {ECO:0000313|EMBL:AGZ15419.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00162270898272614-


Gene family

Gene familysubfamily
Transcription Factors FamilyDBB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005622  intracellular


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000162s00009936.1PF00643.19zf-B_box4473.90E-07
Glyur000162s00009936.1PF00643.19zf-B_box47917.30E-05
Glyur000162s00009936.1PF06203.9CCT2442877.50E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.176
SRR1783600control2.197
SRR1783602moderate drought stress3.690
SRR1811619moderate drought stress3.611

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.590
DRR006520Root Summer glycyrrhizin high producing strain1.712
DRR006521Root Winter glycyrrhizin high producing strain10.106
DRR006522Root Winter glycyrrhizin high producing strain9.508
DRR006523Root Summer glycyrrhizin low producing strain4.732
DRR006524Root Summer glycyrrhizin low producing strain5.536
DRR006525Leaf Summer glycyrrhizin high producing strain57.245
DRR006526Leaf Summer glycyrrhizin high producing strain57.770

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.208
SRR2868004Drought Stress(Tissue:root)34.573
SRR2967015Control (Tissue:root)47.812

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave67.197
SRR9715740Leave38.129
SRR9715741Leave73.483
SRR9715739Root5.813
SRR9715742Root8.190
SRR9715743Root6.831

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h81.862
SRR8749028MeJA induced 9h99.069
SRR8749029MeJA induced 9h63.409
SRR8749030Uninduced17.979
SRR8749031Uninduced15.073
SRR8749032Uninduced38.923

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.847
SRR8400027Control-Root19.944

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved