Gene detail information of Glyur000163s00011097.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03450.1 | 3.00E-138 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_004494071.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Cicer arietinum] |
| trEMBL | tr|V7CZT3|V7CZT3_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW34775.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00163 | 40114 | 45911 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000163s00011097.1 | PF13639.1 | zf-RING_2 | 121 | 166 | 7.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.009 |
| SRR1783600 | control | 2.121 |
| SRR1783602 | moderate drought stress | 2.330 |
| SRR1811619 | moderate drought stress | 2.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.848 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.860 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.089 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.057 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.820 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.793 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.823 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.535 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.439 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.064 |
| SRR2967015 | Control (Tissue:root) | 5.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.112 |
| SRR9715740 | Leave | 2.689 |
| SRR9715741 | Leave | 1.071 |
| SRR9715739 | Root | 1.323 |
| SRR9715742 | Root | 1.921 |
| SRR9715743 | Root | 1.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.758 |
| SRR8749028 | MeJA induced 9h | 6.239 |
| SRR8749029 | MeJA induced 9h | 3.589 |
| SRR8749030 | Uninduced | 1.781 |
| SRR8749031 | Uninduced | 1.566 |
| SRR8749032 | Uninduced | 1.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.366 |
| SRR8400027 | Control-Root | 3.962 |