Gene detail information of Glyur000163s00011105.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G36880.20methionine adenosyltransferase 3
NRXP_011077317.10PREDICTED: S-adenosylmethionine synthase 3 [Sesamum indicum]
COGYP_004983609.16.00E-157S-adenosylmethionine synthase [Geobacillus thermoleovorans CCB_US3_UF5]
Swissprottr|Q6SYB9|METK2_TOBAC0S-adenosylmethionine synthase 2
trEMBLtr|A0A0A0KKA2|A0A0A0KKA2_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN48191.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001637659180105-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00789metK EC:2.5.1.6 Biosynthesis of amino acids map01230
Cysteine and methionine metabolismmap00270


Gene Ontology

biological_process

GO:0006556  S-adenosylmethionine biosynthetic process


molecular_function

GO:0004478  methionine adenosyltransferase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000163s00011105.1PF00438.15S-AdoMet_synt_N31012.70E-41
Glyur000163s00011105.1PF02772.11S-AdoMet_synt_M1162381.50E-49
Glyur000163s00011105.1PF02773.11S-AdoMet_synt_C2403821.60E-68


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control24.805
SRR1783600control25.085
SRR1783602moderate drought stress10.399
SRR1811619moderate drought stress10.559

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain40.944
DRR006520Root Summer glycyrrhizin high producing strain40.043
DRR006521Root Winter glycyrrhizin high producing strain1.130
DRR006522Root Winter glycyrrhizin high producing strain0.785
DRR006523Root Summer glycyrrhizin low producing strain16.263
DRR006524Root Summer glycyrrhizin low producing strain16.689
DRR006525Leaf Summer glycyrrhizin high producing strain9.202
DRR006526Leaf Summer glycyrrhizin high producing strain9.022

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)106.692
SRR2868004Drought Stress(Tissue:root)44.661
SRR2967015Control (Tissue:root)54.223

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.727
SRR9715740Leave3.067
SRR9715741Leave3.407
SRR9715739Root38.002
SRR9715742Root14.667
SRR9715743Root19.680

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h55.024
SRR8749028MeJA induced 9h31.588
SRR8749029MeJA induced 9h37.394
SRR8749030Uninduced6.667
SRR8749031Uninduced7.376
SRR8749032Uninduced10.619

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root39.604
SRR8400027Control-Root47.518

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved