Gene detail information of Glyur000163s00011110.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G36910.10ATP binding cassette subfamily B1
NRXP_007162774.10hypothetical protein PHAVU_001G179300g [Phaseolus vulgaris]
COGYP_005367043.12.00E-115efflux ABC transporter permease/ATP-binding protein [Corallococcus coralloides DSM 2259]
Swissprottr|Q9ZR72|AB1B_ARATH0ABC transporter B family member 1
trEMBLtr|V7CZF2|V7CZF2_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW34768.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00163113735120166+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000163s00011110.1PF00664.18ABC_membrane1143981.50E-39
Glyur000163s00011110.1PF00005.22ABC_tran4686172.70E-36
Glyur000163s00011110.1PF00664.18ABC_membrane7839482.30E-24
Glyur000163s00011110.1PF00005.22ABC_tran106512132.30E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control55.059
SRR1783600control54.883
SRR1783602moderate drought stress37.116
SRR1811619moderate drought stress36.687

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain61.712
DRR006520Root Summer glycyrrhizin high producing strain60.690
DRR006521Root Winter glycyrrhizin high producing strain1.158
DRR006522Root Winter glycyrrhizin high producing strain1.187
DRR006523Root Summer glycyrrhizin low producing strain26.160
DRR006524Root Summer glycyrrhizin low producing strain26.665
DRR006525Leaf Summer glycyrrhizin high producing strain12.746
DRR006526Leaf Summer glycyrrhizin high producing strain12.563

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)97.999
SRR2868004Drought Stress(Tissue:root)61.823
SRR2967015Control (Tissue:root)69.265

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.383
SRR9715740Leave7.283
SRR9715741Leave6.744
SRR9715739Root18.752
SRR9715742Root31.244
SRR9715743Root30.204

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.666
SRR8749028MeJA induced 9h0.574
SRR8749029MeJA induced 9h0.341
SRR8749030Uninduced0.493
SRR8749031Uninduced0.386
SRR8749032Uninduced0.406

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root97.687
SRR8400027Control-Root106.777

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved