Gene detail

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Gene detail information of Glyur000163s00011114.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03760.1	0	Nucleotide-diphospho-sugar transferases superfamily protein
NR	XP_004493996.1	0	PREDICTED: mannan synthase 1-like [Cicer arietinum]
COG	YP_004055443.1	1.00E-58	family 2 glycosyl transferase [Marivirga tractuosa DSM 4126]
Swissprot	tr\|Q6UDF0\|CSLA1_CYATE	0	Mannan synthase 1
trEMBL	tr\|A0A072U2U5\|A0A072U2U5_MEDTR	0	Cellulose synthase-like protein A1 {ECO:0000313\|EMBL:KEH24032.1}

Sequence

Transcript Sequence

>Glyur000163s00011114.1
ATGAGAAACCTAATCTTTGAGGAGCCTGAAGAGGGGATTCCAGGATATGCTTCAAGCAGTCTGCGCTATGCCTGGCAATCAATACGAGCCCCAGTGATAATACCACTCCTAAAACTAGCAGTCATACTGTGCTCAATAATGTCAGTCATGCTATTTCTTGAAAGAGTAGGCATGGCAGCCGTAATTTTGATGGTCAAGGTGCTGAGGAAGAAGAAATACACTAAATACAAGTTGGATGCCATGAAACAGAACCTGGAGAGAAACAAAAAATACCCCATGGTGCTGATCCAAATACCTATGTATAATGAGAAAGAGGTCTACAAGCTTTCAATTGGAGCAGTGTGCGGGCTTTCATGGCCAGCTGATAGATTCATAGTTCAGGTTCTTGATGACTCAACAAATCAAGTCTTACGGGAATTGGTTGAATTGGAGTGTCACAGATGGATGCAGAAAGGTGTGAATGTGAAGTATGAAACAAGGAGAAATCGCAATGGTTACAAGGCAGGTGCCCTAAAAGAAGGTTTAGAGAAGCAATATGTTGAGGATTGCGAGTTTGTAGCAATATTTGATGCNGATTTCCAGCCAGATGCGGATTTTCTTTGGAGGACAATTCCTTATCTTCTTGAGAACCCAAAGTTGGGTCTGGTTCAGGCAAGATGGAAATTTGTGAATTCAGAGGAATGTATGATGACACGGCTGCAAGAGATGTCACTCGATTACCATTTTAGCGTTGAACAGGAAGTGGGCTCCTCAACATACTCATTCTTTGGCTTTAATGGGACAGCAGGAGTTTGGCGGATTCAAGCAATAAAAGATGCCGGAGGATGGAAAGACCGAACCACAGTGGAAGATATGGACCTTGCAGTTAGGGCAAGCCTGCAGGGCTGGGAATTTGTTTTTGTGGGTGATGTAACAGTGAGTTATCCATACTTATCCAATATCTTTGATACAATATCGTGTTCTAAGTGGTCTTGTGGTCCAGCTAATCTCTTCAAGAAAATGACAAAGGAAATCCTCTTTTGTGAAAATCAAGATTTACAAACTCTAAAACTGACTGAAATTTATATCATGTGTATCATCCAGAGGGTATCGCTTCTCAAGAGACTTCATCTTATCTATGCTTTCTTCTTTGTGAGGAAAATAATTGCACATTGGGTCACGTTCTTCTTTTACTGCATAGTCATACCAGCTTGTGTGGTAGTTCCAGAAGTCAATCTCAAAAAGCAGATTGCCATATACATCCCAGCAACCATTACAATTCTAAATGCAGTCTCCACCCCAAGATCCATGCATCTTCTAGTACTCTGGATACTCTTCGAGAATGTCATGTCACTTCATCGAACTAAAGCAGCGATTATAGGACTCTTGGAAGCAAACCGTGTCAATGAATGGGTTGTGACTGAGAAGCTTGGAAATACTATGAAACAGAGGAACAATGCTAGGCCATCAACATCAAGAACTCCTCGGTTTCGAATTATAGAAAGGATCCACCTATTGGAGATTATAGTGGGGATGTATATGCTGCACTGTGCAATCTATGATCTACTCTTCGGACACGATCATTTCTTTATCTATCTGTTGTTACAGGCAGGGGCTTTCTTTACAATGGGATTTGGGCTAGTGGGAACAATTGTACCCAACTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00163	127595	130716	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000163s00011114.1	PF13641.1	Glyco_tranf_2_3	93	306	3.00E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.177
SRR1783600	control	0.163
SRR1783602	moderate drought stress	0.459
SRR1811619	moderate drought stress	0.479

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.009
DRR006520	Root Summer glycyrrhizin high producing strain	0.130
DRR006521	Root Winter glycyrrhizin high producing strain	0.713
DRR006522	Root Winter glycyrrhizin high producing strain	0.789
DRR006523	Root Summer glycyrrhizin low producing strain	0.373
DRR006524	Root Summer glycyrrhizin low producing strain	0.218
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.164
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.134

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.183
SRR2868004	Drought Stress(Tissue:root)	0.278
SRR2967015	Control (Tissue:root)	0.117

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.073
SRR9715740	Leave	0.027
SRR9715741	Leave	0.116
SRR9715739	Root	0.124
SRR9715742	Root	0.174
SRR9715743	Root	0.142

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.570
SRR8749028	MeJA induced 9h	0.907
SRR8749029	MeJA induced 9h	0.358
SRR8749030	Uninduced	0.391
SRR8749031	Uninduced	0.561
SRR8749032	Uninduced	0.349

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.144
SRR8400027	Control-Root	0.284