Gene detail information of Glyur000163s00011115.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G46100.10Histidyl-tRNA synthetase 1
NRXP_003521406.10PREDICTED: histidine--tRNA ligase, cytoplasmic-like isoform X1 [Glycine max]
COGYP_003250680.11.00E-94histidyl-tRNA synthetase [Fibrobacter succinogenes subsp. succinogenes S85]
Swissprottr|P93422|SYH_ORYSJ2.00E-41Histidine--tRNA ligase
trEMBLtr|I1JPP8|I1JPP8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G34050.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00163132740141132-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01892HARS, hisS EC:6.1.1.21 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006427  histidyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004821  histidine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000163s00011115.1PF13393.1tRNA-synt_His893941.70E-50


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.552
SRR1783600control4.809
SRR1783602moderate drought stress4.188
SRR1811619moderate drought stress3.796

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.086
DRR006520Root Summer glycyrrhizin high producing strain5.675
DRR006521Root Winter glycyrrhizin high producing strain4.484
DRR006522Root Winter glycyrrhizin high producing strain4.220
DRR006523Root Summer glycyrrhizin low producing strain4.647
DRR006524Root Summer glycyrrhizin low producing strain4.644
DRR006525Leaf Summer glycyrrhizin high producing strain20.022
DRR006526Leaf Summer glycyrrhizin high producing strain19.485

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.286
SRR2868004Drought Stress(Tissue:root)11.850
SRR2967015Control (Tissue:root)13.413

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.469
SRR9715740Leave26.698
SRR9715741Leave18.682
SRR9715739Root6.861
SRR9715742Root8.195
SRR9715743Root6.581

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.036
SRR8749028MeJA induced 9h10.395
SRR8749029MeJA induced 9h9.729
SRR8749030Uninduced3.919
SRR8749031Uninduced5.505
SRR8749032Uninduced5.246

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.283
SRR8400027Control-Root19.964

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved