Gene detail information of Glyur000163s00011134.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08060.23.00E-70ATP-dependent helicase family protein
NRXP_004494007.10PREDICTED: chromodomain-helicase-DNA-binding protein 3-like [Cicer arietinum]
COGYP_004462436.11.00E-14SNF2-like protein [Mahella australiensis 50-1 BON]
Swissprottr|Q9M658|MOM1_ARATH8.00E-76Helicase protein MOM1
trEMBLtr|A0A072UDX7|A0A072UDX7_MEDTR0SNF2 family amino-terminal protein {ECO:0000313|EMBL:KEH24020.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00163258337272308+


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000163s00011134.2PF00385.19Chromo2443327.30E-05
Glyur000163s00011134.2PF00176.18SNF2_N4776233.60E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.488
SRR1783600control13.621
SRR1783602moderate drought stress12.922
SRR1811619moderate drought stress12.903

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.531
DRR006520Root Summer glycyrrhizin high producing strain9.221
DRR006521Root Winter glycyrrhizin high producing strain3.587
DRR006522Root Winter glycyrrhizin high producing strain3.544
DRR006523Root Summer glycyrrhizin low producing strain9.206
DRR006524Root Summer glycyrrhizin low producing strain9.103
DRR006525Leaf Summer glycyrrhizin high producing strain2.806
DRR006526Leaf Summer glycyrrhizin high producing strain2.868

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.049
SRR2868004Drought Stress(Tissue:root)13.375
SRR2967015Control (Tissue:root)13.766

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.311
SRR9715740Leave2.251
SRR9715741Leave2.373
SRR9715739Root0.546
SRR9715742Root4.151
SRR9715743Root3.790

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.653
SRR8749028MeJA induced 9h5.656
SRR8749029MeJA induced 9h4.538
SRR8749030Uninduced2.208
SRR8749031Uninduced2.242
SRR8749032Uninduced1.847

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.862
SRR8400027Control-Root14.921

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved