Gene detail information of Glyur000163s00011136.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G37040.10PHE ammonia lyase 1
NRACF94716.10phenylalanine ammonia lyase [Robinia pseudoacacia]
COGYP_007056096.14.00E-82histidine ammonia-lyase [Rivularia sp. PCC 7116]
Swissprottr|P45734|PALY_TRISU0Phenylalanine ammonia-lyase
trEMBLtr|B6S390|B6S390_ROBPS0Phenylalanine ammonia-lyase {ECO:0000256|RuleBase:RU003955}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00163268768283578-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10775PAL EC:4.3.1.24 Phenylalanine metabolism map00360
Phenylpropanoid biosynthesismap00940


Gene Ontology

biological_process

GO:0006559  L-phenylalanine catabolic process

GO:0009058  biosynthetic process


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0003824  catalytic activity

GO:0016841  ammonia-lyase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000163s00011136.1PF00221.14Lyase_aromatic625581.60E-173


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.694
SRR1783600control4.769
SRR1783602moderate drought stress6.102
SRR1811619moderate drought stress6.151

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.294
DRR006520Root Summer glycyrrhizin high producing strain6.083
DRR006521Root Winter glycyrrhizin high producing strain0.162
DRR006522Root Winter glycyrrhizin high producing strain0.149
DRR006523Root Summer glycyrrhizin low producing strain9.931
DRR006524Root Summer glycyrrhizin low producing strain9.696
DRR006525Leaf Summer glycyrrhizin high producing strain16.091
DRR006526Leaf Summer glycyrrhizin high producing strain16.743

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)91.421
SRR2868004Drought Stress(Tissue:root)289.462
SRR2967015Control (Tissue:root)165.936

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave99.691
SRR9715740Leave30.977
SRR9715741Leave189.477
SRR9715739Root8.168
SRR9715742Root40.037
SRR9715743Root32.230

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.108
SRR8749028MeJA induced 9h16.438
SRR8749029MeJA induced 9h2.832
SRR8749030Uninduced157.241
SRR8749031Uninduced59.612
SRR8749032Uninduced30.059

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root60.170
SRR8400027Control-Root56.393

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved