Gene detail information of Glyur000163s00011137.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G53260.13.00E-55phenylalanine ammonia-lyase 2
NRAHL27351.15.40E-74phenylalanine ammonia-lyase, partial [Glycine max]
COGYP_001453914.16.00E-21histidine ammonia-lyase [Citrobacter koseri ATCC BAA-895]
Swissprottr|P45734|PALY_TRISU1.00E-71Phenylalanine ammonia-lyase
trEMBLtr|W8P2F3|W8P2F3_GLYSO2.00E-74Phenylalanine ammonia-lyase {ECO:0000313|EMBL:AHL27363.1} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00163280693283357+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10775PAL EC:4.3.1.24 Phenylalanine metabolism map00360
Phenylpropanoid biosynthesismap00940


Gene Ontology

biological_process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0016841  ammonia-lyase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000163s00011137.1PF00221.14Lyase_aromatic101341.20E-38


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.243
SRR1783600control2.051
SRR1783602moderate drought stress2.581
SRR1811619moderate drought stress2.505

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.172
DRR006520Root Summer glycyrrhizin high producing strain2.406
DRR006521Root Winter glycyrrhizin high producing strain0.037
DRR006522Root Winter glycyrrhizin high producing strain0.097
DRR006523Root Summer glycyrrhizin low producing strain5.129
DRR006524Root Summer glycyrrhizin low producing strain5.787
DRR006525Leaf Summer glycyrrhizin high producing strain4.754
DRR006526Leaf Summer glycyrrhizin high producing strain4.502

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.964
SRR2868004Drought Stress(Tissue:root)76.478
SRR2967015Control (Tissue:root)43.224

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.043
SRR9715740Leave8.311
SRR9715741Leave41.325
SRR9715739Root3.611
SRR9715742Root13.162
SRR9715743Root11.062

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.964
SRR8749028MeJA induced 9h5.852
SRR8749029MeJA induced 9h1.022
SRR8749030Uninduced38.021
SRR8749031Uninduced10.370
SRR8749032Uninduced3.790

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.024
SRR8400027Control-Root16.057

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved