Gene detail information of Glyur000163s00011138.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G10340.11.00E-151phenylalanine ammonia-lyase 4
NRACF94716.10phenylalanine ammonia lyase [Robinia pseudoacacia]
COGYP_001865631.18.00E-42phenylalanine/histidine ammonia-lyase [Nostoc punctiforme PCC 73102]
Swissprottr|P45734|PALY_TRISU0Phenylalanine ammonia-lyase
trEMBLtr|B6S390|B6S390_ROBPS0Phenylalanine ammonia-lyase {ECO:0000256|RuleBase:RU003955}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00163290757293928+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10775PAL EC:4.3.1.24 Phenylalanine metabolism map00360
Phenylpropanoid biosynthesismap00940


Gene Ontology

biological_process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0016841  ammonia-lyase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000163s00011138.1PF00221.14Lyase_aromatic583371.10E-91


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.267
SRR1783600control10.351
SRR1783602moderate drought stress13.403
SRR1811619moderate drought stress13.064

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.318
DRR006520Root Summer glycyrrhizin high producing strain9.193
DRR006521Root Winter glycyrrhizin high producing strain0.152
DRR006522Root Winter glycyrrhizin high producing strain0.146
DRR006523Root Summer glycyrrhizin low producing strain13.929
DRR006524Root Summer glycyrrhizin low producing strain12.971
DRR006525Leaf Summer glycyrrhizin high producing strain26.766
DRR006526Leaf Summer glycyrrhizin high producing strain25.867

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)126.572
SRR2868004Drought Stress(Tissue:root)354.905
SRR2967015Control (Tissue:root)194.641

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave173.320
SRR9715740Leave131.716
SRR9715741Leave279.039
SRR9715739Root37.166
SRR9715742Root93.768
SRR9715743Root78.054

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h43.884
SRR8749028MeJA induced 9h22.966
SRR8749029MeJA induced 9h7.863
SRR8749030Uninduced229.049
SRR8749031Uninduced57.402
SRR8749032Uninduced24.153

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root82.208
SRR8400027Control-Root81.172

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved