Gene detail information of Glyur000164s00014469.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G24320.11.00E-141Transducin/WD40 repeat-like superfamily protein
NRXP_004498503.10PREDICTED: WD repeat-containing protein 44-like [Cicer arietinum]
COGYP_007121051.12.00E-24WD40 repeat-containing protein [Microcoleus sp. PCC 7113]
Swissprottr|P49178|GBB_MAIZE2.00E-14Guanine nucleotide-binding protein subunit beta
trEMBLtr|G7ZWE5|G7ZWE5_MEDTR0WD repeat-containing protein {ECO:0000313|EMBL:AES83533.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001647795305+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000164s00014469.1PF00400.27WD402783099.80E-10
Glyur000164s00014469.1PF00400.27WD403784124.80E-09
Glyur000164s00014469.1PF00400.27WD404244544.10E-07
Glyur000164s00014469.1PF00400.27WD405635880.0054


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.606
SRR1783600control2.699
SRR1783602moderate drought stress1.642
SRR1811619moderate drought stress1.717

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.765
DRR006520Root Summer glycyrrhizin high producing strain1.755
DRR006521Root Winter glycyrrhizin high producing strain2.898
DRR006522Root Winter glycyrrhizin high producing strain3.264
DRR006523Root Summer glycyrrhizin low producing strain1.052
DRR006524Root Summer glycyrrhizin low producing strain0.962
DRR006525Leaf Summer glycyrrhizin high producing strain3.116
DRR006526Leaf Summer glycyrrhizin high producing strain2.953

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.097
SRR2868004Drought Stress(Tissue:root)12.947
SRR2967015Control (Tissue:root)9.503

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.898
SRR9715740Leave5.691
SRR9715741Leave3.230
SRR9715739Root0.957
SRR9715742Root3.284
SRR9715743Root2.547

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.895
SRR8749028MeJA induced 9h4.061
SRR8749029MeJA induced 9h0.854
SRR8749030Uninduced1.771
SRR8749031Uninduced2.022
SRR8749032Uninduced1.460

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.887
SRR8400027Control-Root11.310

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved