Gene detail information of Glyur000164s00014484.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00990.1 | 1.00E-151 | Transcription factor jumonji (jmjC) domain-containing protein |
| NR | XP_006596786.1 | 0 | PREDICTED: uncharacterized protein LOC100800662 [Glycine max] |
| Swissprot | tr|Q9SSE9|JMJ25_ARATH | 4.00E-81 | Lysine-specific demethylase JMJ25 |
| trEMBL | tr|K7M755|K7M755_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G26015.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00164 | 122296 | 131265 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Jumonji |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000164s00014484.1 | PF08879.5 | WRC | 8 | 50 | 5.20E-12 |
| Glyur000164s00014484.1 | PF02373.17 | JmjC | 1793 | 1898 | 6.10E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.581 |
| SRR1783600 | control | 9.621 |
| SRR1783602 | moderate drought stress | 14.758 |
| SRR1811619 | moderate drought stress | 14.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.271 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.106 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.494 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.494 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.466 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.550 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.657 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.612 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.672 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.295 |
| SRR2967015 | Control (Tissue:root) | 3.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.540 |
| SRR9715740 | Leave | 0.136 |
| SRR9715741 | Leave | 0.099 |
| SRR9715739 | Root | 0.693 |
| SRR9715742 | Root | 4.508 |
| SRR9715743 | Root | 4.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.780 |
| SRR8749028 | MeJA induced 9h | 0.171 |
| SRR8749029 | MeJA induced 9h | 0.418 |
| SRR8749030 | Uninduced | 0.133 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.401 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.702 |
| SRR8400027 | Control-Root | 9.710 |