Gene detail information of Glyur000164s00014485.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G61790.15.00E-154Protein with RING/U-box and TRAF-like domains
NRXP_004502650.10PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Cicer arietinum]
Swissprottr|Q8S3N1|SINA5_ARATH0E3 ubiquitin-protein ligase SINAT5
trEMBLtr|H8WVC6|H8WVC6_LOTJA0E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00164132612136737+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04506SIAH1 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
MAPK signaling pathway - flymap04013
Wnt signaling pathwaymap04310
p53 signaling pathwaymap04115


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0007275  multicellular organism development

GO:0016567  protein ubiquitination


cellular_component

GO:0005634  nucleus


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005515  protein binding

GO:0008270  zinc ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000164s00014485.1PF03145.11Sina1133121.90E-74


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.177
SRR1783600control26.189
SRR1783602moderate drought stress25.828
SRR1811619moderate drought stress25.755

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain30.101
DRR006520Root Summer glycyrrhizin high producing strain29.365
DRR006521Root Winter glycyrrhizin high producing strain48.336
DRR006522Root Winter glycyrrhizin high producing strain46.008
DRR006523Root Summer glycyrrhizin low producing strain36.188
DRR006524Root Summer glycyrrhizin low producing strain36.404
DRR006525Leaf Summer glycyrrhizin high producing strain20.226
DRR006526Leaf Summer glycyrrhizin high producing strain20.589

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.839
SRR2868004Drought Stress(Tissue:root)31.629
SRR2967015Control (Tissue:root)30.737

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.287
SRR9715740Leave27.068
SRR9715741Leave22.245
SRR9715739Root24.250
SRR9715742Root23.142
SRR9715743Root25.380

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.159
SRR8749028MeJA induced 9h18.836
SRR8749029MeJA induced 9h22.486
SRR8749030Uninduced17.796
SRR8749031Uninduced7.137
SRR8749032Uninduced9.221

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.738
SRR8400027Control-Root20.424

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved