Gene detail information of Glyur000164s00014486.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G53370.10pectin methylesterase PCR fragment F
NRXP_004498516.10PREDICTED: probable pectinesterase/pectinesterase inhibitor 34-like [Cicer arietinum]
COGYP_006407803.15.00E-49pectin methylesterase [Belliella baltica DSM 15883]
Swissprottr|Q9FK05|PME61_ARATH0Pectinesterase 61
trEMBLtr|G7I4A4|G7I4A4_MEDTR0Pectinesterase {ECO:0000256|RuleBase:RU000589}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00164140123144336-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE8


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0042545  cell wall modification


cellular_component

GO:0005618  cell wall


molecular_function

GO:0004857  enzyme inhibitor activity

GO:0030599  pectinesterase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000164s00014486.1PF04043.10PMEI852424.90E-35
Glyur000164s00014486.1PF01095.14Pectinesterase3015987.00E-143


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control38.406
SRR1783600control38.533
SRR1783602moderate drought stress24.138
SRR1811619moderate drought stress24.065

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain48.371
DRR006520Root Summer glycyrrhizin high producing strain48.619
DRR006521Root Winter glycyrrhizin high producing strain1.478
DRR006522Root Winter glycyrrhizin high producing strain1.444
DRR006523Root Summer glycyrrhizin low producing strain26.784
DRR006524Root Summer glycyrrhizin low producing strain26.858
DRR006525Leaf Summer glycyrrhizin high producing strain39.370
DRR006526Leaf Summer glycyrrhizin high producing strain38.850

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)66.829
SRR2868004Drought Stress(Tissue:root)61.769
SRR2967015Control (Tissue:root)44.765

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave44.416
SRR9715740Leave18.122
SRR9715741Leave33.919
SRR9715739Root27.347
SRR9715742Root101.072
SRR9715743Root87.694

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.720
SRR8749028MeJA induced 9h4.888
SRR8749029MeJA induced 9h5.640
SRR8749030Uninduced1.562
SRR8749031Uninduced0.479
SRR8749032Uninduced4.049

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root37.458
SRR8400027Control-Root50.945

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved