Gene detail information of Glyur000164s00014492.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G25000.12.00E-57alpha-amylase-like
NRXP_004499064.17.27E-138PREDICTED: alpha-amylase-like isoform X2 [Cicer arietinum]
COGYP_003951996.12.00E-37alpha-amylase [Stigmatella aurantiaca DW4/3-1]
Swissprottr|P17859|AMYA_VIGMU3.00E-103Alpha-amylase (Precursor)
trEMBLtr|A0A067KBX0|A0A067KBX0_JATCU4.00E-129Uncharacterized protein {ECO:0000313|EMBL:KDP29720.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00164196271198773-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH13


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01176AMY, amyA, malS EC:3.2.1.1 Starch and sucrose metabolism map00500
Carbohydrate digestion and absorptionmap04973


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004556  alpha-amylase activity

GO:0005509  calcium ion binding

GO:0043169  cation binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000164s00014492.1PF00128.19Alpha-amylase461183.30E-10
Glyur000164s00014492.1PF07821.7Alpha-amyl_C22573141.80E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.423
SRR1783600control4.214
SRR1783602moderate drought stress5.354
SRR1811619moderate drought stress4.892

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.593
DRR006520Root Summer glycyrrhizin high producing strain5.850
DRR006521Root Winter glycyrrhizin high producing strain2.699
DRR006522Root Winter glycyrrhizin high producing strain2.502
DRR006523Root Summer glycyrrhizin low producing strain33.244
DRR006524Root Summer glycyrrhizin low producing strain33.042
DRR006525Leaf Summer glycyrrhizin high producing strain2.089
DRR006526Leaf Summer glycyrrhizin high producing strain2.000

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.002
SRR2868004Drought Stress(Tissue:root)1.441
SRR2967015Control (Tissue:root)1.018

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.922
SRR9715740Leave23.570
SRR9715741Leave11.062
SRR9715739Root7.530
SRR9715742Root3.742
SRR9715743Root4.108

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.770
SRR8749028MeJA induced 9h34.797
SRR8749029MeJA induced 9h12.555
SRR8749030Uninduced3.568
SRR8749031Uninduced2.460
SRR8749032Uninduced2.164

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.093
SRR8400027Control-Root3.998

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved