Gene detail information of Glyur000165s00008482.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G14880.11.00E-32SWIB/MDM2 domain superfamily protein
NRAFK49439.12.58E-63unknown [Lotus japonicus]
COGYP_003124379.11.00E-18SWIB/MDM2 domain-containing protein [Chitinophaga pinensis DSM 2588]
Swissprottr|Q9SIV5|C3H19_ARATH6.00E-07Zinc finger CCCH domain-containing protein 19
trEMBLtr|I3TA97|I3TA97_LOTJA1.00E-63Uncharacterized protein {ECO:0000313|EMBL:AFK49439.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001653680738583-


Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000165s00008482.1PF02201.13SWIB501261.50E-26


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control61.082
SRR1783600control60.656
SRR1783602moderate drought stress78.201
SRR1811619moderate drought stress76.943

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain67.888
DRR006520Root Summer glycyrrhizin high producing strain66.606
DRR006521Root Winter glycyrrhizin high producing strain110.677
DRR006522Root Winter glycyrrhizin high producing strain106.788
DRR006523Root Summer glycyrrhizin low producing strain91.560
DRR006524Root Summer glycyrrhizin low producing strain92.108
DRR006525Leaf Summer glycyrrhizin high producing strain263.063
DRR006526Leaf Summer glycyrrhizin high producing strain261.164

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)53.861
SRR2868004Drought Stress(Tissue:root)31.915
SRR2967015Control (Tissue:root)49.809

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave127.973
SRR9715740Leave192.136
SRR9715741Leave110.544
SRR9715739Root53.521
SRR9715742Root40.650
SRR9715743Root38.064

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h68.973
SRR8749028MeJA induced 9h37.273
SRR8749029MeJA induced 9h34.396
SRR8749030Uninduced28.052
SRR8749031Uninduced18.460
SRR8749032Uninduced23.113

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root60.109
SRR8400027Control-Root48.834

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved