Gene detail information of Glyur000165s00008487.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G44750.20DNA-directed DNA polymerases
NRXP_004511296.10PREDICTED: DNA repair protein REV1-like isoform X1 [Cicer arietinum]
COGYP_004114698.18.00E-57DNA-directed DNA polymerase [Pantoea sp. At-9b]
Swissprottr|Q8RXL1|REV1_ARATH0DNA repair protein REV1
trEMBLtr|A0A072UBX5|A0A072UBX5_MEDTR0DNA repair protein REV1 {ECO:0000313|EMBL:KEH27324.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001655888372856-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03515REV1 EC:2.7.7.- Fanconi anemia pathway map03460


Gene Ontology

biological_process

GO:0006281  DNA repair


molecular_function

GO:0000287  magnesium ion binding

GO:0003684  damaged DNA binding

GO:0003887  DNA-directed DNA polymerase activity

GO:0016779  nucleotidyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000165s00008487.2PF00533.21BRCT1131893.70E-07
Glyur000165s00008487.2PF00817.15IMS4145602.20E-43
Glyur000165s00008487.2PF11799.3IMS_C6447763.70E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.068
SRR1783600control4.103
SRR1783602moderate drought stress7.342
SRR1811619moderate drought stress7.380

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.074
DRR006520Root Summer glycyrrhizin high producing strain4.291
DRR006521Root Winter glycyrrhizin high producing strain7.068
DRR006522Root Winter glycyrrhizin high producing strain6.522
DRR006523Root Summer glycyrrhizin low producing strain4.530
DRR006524Root Summer glycyrrhizin low producing strain4.472
DRR006525Leaf Summer glycyrrhizin high producing strain4.325
DRR006526Leaf Summer glycyrrhizin high producing strain4.508

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.999
SRR2868004Drought Stress(Tissue:root)15.445
SRR2967015Control (Tissue:root)14.010

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.068
SRR9715740Leave9.119
SRR9715741Leave8.142
SRR9715739Root0.417
SRR9715742Root5.977
SRR9715743Root4.087

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.456
SRR8749028MeJA induced 9h9.195
SRR8749029MeJA induced 9h2.440
SRR8749030Uninduced3.571
SRR8749031Uninduced4.006
SRR8749032Uninduced2.007

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.407
SRR8400027Control-Root12.988

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved