Gene detail information of Glyur000165s00008503.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29530.1 | 6.00E-71 | Pyridoxal phosphate phosphatase-related protein |
| NR | XP_003630643.1 | 1.49E-128 | Pyridoxal phosphate phosphatase PHOSPHO2 [Medicago truncatula] |
| Swissprot | tr|Q9SU92|PPSP3_ARATH | 4.00E-93 | Inorganic pyrophosphatase 3 |
| trEMBL | tr|G7LJK6|G7LJK6_MEDTR | 6.00E-129 | 2,3-diketo-5-methylthio-1-phosphopentane phosphatase {ECO:0000313|EMBL:AET05119.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00165 | 160321 | 164292 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13248 | PHOSPHO2 | EC:3.1.3.74 | Vitamin B6 metabolism | map00750 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000165s00008503.1 | PF06888.7 | Put_Phosphatase | 7 | 112 | 2.00E-38 |
| Glyur000165s00008503.1 | PF06888.7 | Put_Phosphatase | 115 | 327 | 3.40E-79 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.820 |
| SRR1783600 | control | 18.770 |
| SRR1783602 | moderate drought stress | 18.850 |
| SRR1811619 | moderate drought stress | 18.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.059 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.189 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.461 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.442 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.561 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.593 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.061 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.059 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.630 |
| SRR2967015 | Control (Tissue:root) | 8.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.791 |
| SRR9715740 | Leave | 7.294 |
| SRR9715741 | Leave | 8.702 |
| SRR9715739 | Root | 8.930 |
| SRR9715742 | Root | 10.858 |
| SRR9715743 | Root | 12.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.510 |
| SRR8749028 | MeJA induced 9h | 7.018 |
| SRR8749029 | MeJA induced 9h | 6.845 |
| SRR8749030 | Uninduced | 7.957 |
| SRR8749031 | Uninduced | 4.120 |
| SRR8749032 | Uninduced | 6.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.163 |
| SRR8400027 | Control-Root | 16.532 |