Gene detail information of Glyur000165s00008511.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G19590.1 | 6.00E-109 | ACC oxidase 1 |
| NR | KHN16682.1 | 2.67E-165 | 1-aminocyclopropane-1-carboxylate oxidase 1 [Glycine soja] |
| COG | YP_008517939.1 | 1.00E-19 | putative oxidoreductase, 2OG-Fe(II) oxygenase family [Variovorax paradoxus B4] |
| Swissprot | tr|Q9ZUN4|ACCO1_ARATH | 7.00E-136 | 1-aminocyclopropane-1-carboxylate oxidase 1 |
| trEMBL | tr|I1KPS3|I1KPS3_SOYBN | 3.00E-165 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G03310.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00165 | 207514 | 208815 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K05933 | E1.14.17.4 | EC:1.14.17.4 | Cysteine and methionine metabolism | map00270 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000165s00008511.1 | PF14226.1 | DIOX_N | 3 | 62 | 2.20E-14 |
| Glyur000165s00008511.1 | PF03171.15 | 2OG-FeII_Oxy | 120 | 217 | 2.30E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.462 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.719 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.403 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.181 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.086 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.368 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.625 |
| SRR2967015 | Control (Tissue:root) | 2.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.696 |
| SRR8749028 | MeJA induced 9h | 65.647 |
| SRR8749029 | MeJA induced 9h | 98.890 |
| SRR8749030 | Uninduced | 1552.460 |
| SRR8749031 | Uninduced | 1648.947 |
| SRR8749032 | Uninduced | 2075.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.056 |
| SRR8400027 | Control-Root | 2.262 |