Gene detail information of Glyur000165s00008518.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G19570.18.00E-75cytidine deaminase 1
NRXP_003630631.19.15E-138Cytidine deaminase [Medicago truncatula]
COGYP_004651685.19.00E-53cytidine deaminase [Parachlamydia acanthamoebae UV-7]
Swissprottr|O65896|CDA1_ARATH8.00E-103Cytidine deaminase 1
trEMBLtr|G7LJJ4|G7LJJ4_MEDTR3.00E-138Cytidine deaminase {ECO:0000256|PIRNR:PIRNR006334}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00165221891223213+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01489cdd, CDA EC:3.5.4.5 Pyrimidine metabolism map00240
Drug metabolism - other enzymesmap00983


Gene Ontology

biological_process

GO:0009972  cytidine deamination


molecular_function

GO:0003824  catalytic activity

GO:0004126  cytidine deaminase activity

GO:0008270  zinc ion binding

GO:0016787  hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000165s00008518.1PF00383.17dCMP_cyt_deam_1331162.60E-10
Glyur000165s00008518.1PF08211.6dCMP_cyt_deam_21362774.40E-41


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.321
SRR1783600control12.151
SRR1783602moderate drought stress5.221
SRR1811619moderate drought stress4.956

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.146
DRR006520Root Summer glycyrrhizin high producing strain1.447
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.841
DRR006524Root Summer glycyrrhizin low producing strain0.844
DRR006525Leaf Summer glycyrrhizin high producing strain4.954
DRR006526Leaf Summer glycyrrhizin high producing strain4.876

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.546
SRR2868004Drought Stress(Tissue:root)22.149
SRR2967015Control (Tissue:root)15.766

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.857
SRR9715740Leave5.909
SRR9715741Leave3.189
SRR9715739Root6.384
SRR9715742Root4.498
SRR9715743Root4.445

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.529
SRR8749028MeJA induced 9h2.355
SRR8749029MeJA induced 9h2.278
SRR8749030Uninduced0.974
SRR8749031Uninduced0.825
SRR8749032Uninduced0.831

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.645
SRR8400027Control-Root5.074

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved