Gene detail information of Glyur000165s00008526.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G39930.10isoamylase 1
NRXP_004503543.10PREDICTED: isoamylase 1, chloroplastic-like isoform X2 [Cicer arietinum]
COGYP_008105.10isoamylase [Candidatus Protochlamydia amoebophila UWE25]
Swissprottr|O04196|ISOA1_ARATH0Isoamylase 1, chloroplastic (Precursor)
trEMBLtr|A4PIS8|A4PIS8_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW32223.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00165266410276447+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM48,GH13


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01214ISA, treX EC:3.2.1.68 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0043169  cation binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000165s00008526.1PF02922.13CBM_48861804.30E-15
Glyur000165s00008526.1PF00128.19Alpha-amylase2504271.50E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control70.902
SRR1783600control71.122
SRR1783602moderate drought stress55.377
SRR1811619moderate drought stress55.406

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain61.808
DRR006520Root Summer glycyrrhizin high producing strain61.419
DRR006521Root Winter glycyrrhizin high producing strain4.428
DRR006522Root Winter glycyrrhizin high producing strain4.534
DRR006523Root Summer glycyrrhizin low producing strain35.155
DRR006524Root Summer glycyrrhizin low producing strain35.050
DRR006525Leaf Summer glycyrrhizin high producing strain23.472
DRR006526Leaf Summer glycyrrhizin high producing strain23.471

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.073
SRR2868004Drought Stress(Tissue:root)9.058
SRR2967015Control (Tissue:root)8.913

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.254
SRR9715740Leave10.154
SRR9715741Leave6.365
SRR9715739Root16.851
SRR9715742Root26.021
SRR9715743Root26.086

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.154
SRR8749028MeJA induced 9h4.989
SRR8749029MeJA induced 9h3.471
SRR8749030Uninduced0.838
SRR8749031Uninduced0.572
SRR8749032Uninduced0.974

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root99.433
SRR8400027Control-Root105.829

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved