Gene detail information of Glyur000166s00010574.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G16740.17.00E-122terpene synthase 03
NRQ6EJ97.10RecName: Full=Isoprene synthase, chloroplastic; Flags: Precursor [Pueraria montana var. lobata]
Swissprottr|Q6EJ97|ISPS_PUEML0Isoprene synthase, chloroplastic (Precursor)
trEMBLtr|H2CSU7|H2CSU7_9FABA0Isoprene synthase {ECO:0000313|EMBL:AEK70969.1} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00166108964118684+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12742ispS EC:4.2.3.27 Terpenoid backbone biosynthesis map00900


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0000287  magnesium ion binding

GO:0010333  terpene synthase activity

GO:0016829  lyase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000166s00010574.1PF01397.16Terpene_synth752413.80E-48
Glyur000166s00010574.1PF03936.11Terpene_synth_C3025751.70E-87
Glyur000166s00010574.1PF14617.1CMS16468886.20E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.116
SRR1783600control8.159
SRR1783602moderate drought stress5.927
SRR1811619moderate drought stress6.051

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.213
DRR006520Root Summer glycyrrhizin high producing strain8.158
DRR006521Root Winter glycyrrhizin high producing strain7.569
DRR006522Root Winter glycyrrhizin high producing strain7.163
DRR006523Root Summer glycyrrhizin low producing strain7.998
DRR006524Root Summer glycyrrhizin low producing strain8.044
DRR006525Leaf Summer glycyrrhizin high producing strain559.009
DRR006526Leaf Summer glycyrrhizin high producing strain558.471

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.381
SRR2868004Drought Stress(Tissue:root)7.722
SRR2967015Control (Tissue:root)6.650

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1069.090
SRR9715740Leave1804.785
SRR9715741Leave1065.455
SRR9715739Root2.493
SRR9715742Root6.528
SRR9715743Root5.779

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.494
SRR8749028MeJA induced 9h7.561
SRR8749029MeJA induced 9h8.314
SRR8749030Uninduced13.945
SRR8749031Uninduced16.950
SRR8749032Uninduced2.551

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.369
SRR8400027Control-Root10.695

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved