Gene detail information of Glyur000166s00010598.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13160.11.00E-88Protein kinase superfamily protein
NRXP_009763258.14.09E-146PREDICTED: serine/threonine-protein kinase PBS1 [Nicotiana sylvestris]
COGYP_001958461.13.00E-10hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q9FE20|PBS1_ARATH3.00E-107Serine/threonine-protein kinase PBS1
trEMBLtr|V7BAH9|V7BAH9_PHAVU2.00E-117Uncharacterized protein {ECO:0000313|EMBL:ESW14590.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00166227499233637-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.2.2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13430PBS1 EC:2.7.11.1 Plant-pathogen interaction map04626


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000166s00010598.1PF07714.12Pkinase_Tyr972103.10E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control28.704
SRR1783600control28.764
SRR1783602moderate drought stress18.528
SRR1811619moderate drought stress18.255

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.954
DRR006520Root Summer glycyrrhizin high producing strain26.684
DRR006521Root Winter glycyrrhizin high producing strain54.496
DRR006522Root Winter glycyrrhizin high producing strain53.684
DRR006523Root Summer glycyrrhizin low producing strain26.324
DRR006524Root Summer glycyrrhizin low producing strain26.418
DRR006525Leaf Summer glycyrrhizin high producing strain14.729
DRR006526Leaf Summer glycyrrhizin high producing strain14.551

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)48.098
SRR2868004Drought Stress(Tissue:root)45.359
SRR2967015Control (Tissue:root)44.814

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave25.531
SRR9715740Leave30.382
SRR9715741Leave37.978
SRR9715739Root21.074
SRR9715742Root38.419
SRR9715743Root33.173

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h33.247
SRR8749028MeJA induced 9h31.203
SRR8749029MeJA induced 9h25.253
SRR8749030Uninduced41.555
SRR8749031Uninduced36.139
SRR8749032Uninduced31.661

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root37.209
SRR8400027Control-Root32.731

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved