Gene detail information of Glyur000167s00012262.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G22200.10Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NRKHN09253.10Putative aminotransferase y4uB [Glycine soja]
COGYP_002297234.15.00E-171class III aminotransferase [Rhodospirillum centenum SW]
Swissprottr|Q84P52|GATP3_SOLLC0Gamma aminobutyrate transaminase 3, chloroplastic (Precursor)
trEMBLtr|I1LIN0|I1LIN0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G10190.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001674765756343-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K16871POP2 EC:2.6.1.96 Butanoate metabolism map00650
Alanine, aspartate and glutamate metabolismmap00250


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0008483  transaminase activity

GO:0030170  pyridoxal phosphate binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000167s00012262.1PF00202.16Aminotran_3744442.40E-83


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.017
SRR1783600control25.088
SRR1783602moderate drought stress21.081
SRR1811619moderate drought stress20.902

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain44.183
DRR006520Root Summer glycyrrhizin high producing strain44.462
DRR006521Root Winter glycyrrhizin high producing strain18.937
DRR006522Root Winter glycyrrhizin high producing strain18.407
DRR006523Root Summer glycyrrhizin low producing strain48.420
DRR006524Root Summer glycyrrhizin low producing strain47.710
DRR006525Leaf Summer glycyrrhizin high producing strain44.713
DRR006526Leaf Summer glycyrrhizin high producing strain44.954

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)116.376
SRR2868004Drought Stress(Tissue:root)172.053
SRR2967015Control (Tissue:root)147.299

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave52.217
SRR9715740Leave54.079
SRR9715741Leave71.319
SRR9715739Root32.586
SRR9715742Root51.690
SRR9715743Root42.406

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h66.068
SRR8749028MeJA induced 9h138.787
SRR8749029MeJA induced 9h72.672
SRR8749030Uninduced79.169
SRR8749031Uninduced30.713
SRR8749032Uninduced21.354

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root61.342
SRR8400027Control-Root87.626

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved