Gene detail information of Glyur000167s00012265.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G50420.1 | 4.00E-179 | scarecrow-like 3 |
| NR | XP_003537745.1 | 0 | PREDICTED: scarecrow-like protein 3-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9LPR8|SCL3_ARATH | 0 | Scarecrow-like protein 3 |
| trEMBL | tr|I1LIM7|I1LIM7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G10170.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00167 | 76763 | 79068 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000167s00012265.1 | PF03514.9 | GRAS | 36 | 460 | 2.80E-138 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.409 |
| SRR1783600 | control | 18.345 |
| SRR1783602 | moderate drought stress | 18.426 |
| SRR1811619 | moderate drought stress | 18.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.466 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.107 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.933 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.293 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.509 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.215 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.128 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.938 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.224 |
| SRR2868004 | Drought Stress(Tissue:root) | 25.788 |
| SRR2967015 | Control (Tissue:root) | 25.462 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 17.018 |
| SRR9715740 | Leave | 24.372 |
| SRR9715741 | Leave | 23.855 |
| SRR9715739 | Root | 9.103 |
| SRR9715742 | Root | 40.471 |
| SRR9715743 | Root | 32.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.132 |
| SRR8749028 | MeJA induced 9h | 11.136 |
| SRR8749029 | MeJA induced 9h | 6.134 |
| SRR8749030 | Uninduced | 11.188 |
| SRR8749031 | Uninduced | 5.423 |
| SRR8749032 | Uninduced | 5.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.270 |
| SRR8400027 | Control-Root | 19.074 |