Gene detail information of Glyur000167s00012267.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G12400.1 | 0 | DNA binding;zinc ion binding;DNA binding |
| NR | XP_003538947.1 | 0 | PREDICTED: uncharacterized protein LOC100800973 isoform X1 [Glycine max] |
| Swissprot | tr|F4KBP5|CHR4_ARATH | 4.00E-09 | Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|K7LNU7|K7LNU7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G10150.6} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00167 | 98875 | 113773 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | DDT |
| EAR motif-containing Proteins | DDT |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000167s00012267.1 | PF02791.12 | DDT | 549 | 605 | 1.20E-10 |
| Glyur000167s00012267.1 | PF00628.24 | PHD | 745 | 787 | 9.40E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.315 |
| SRR1783600 | control | 5.283 |
| SRR1783602 | moderate drought stress | 9.656 |
| SRR1811619 | moderate drought stress | 9.508 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.274 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.172 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.177 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.056 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.123 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.007 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.102 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.447 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.004 |
| SRR2967015 | Control (Tissue:root) | 14.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.681 |
| SRR9715740 | Leave | 6.399 |
| SRR9715741 | Leave | 6.023 |
| SRR9715739 | Root | 1.016 |
| SRR9715742 | Root | 9.327 |
| SRR9715743 | Root | 7.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.203 |
| SRR8749028 | MeJA induced 9h | 20.647 |
| SRR8749029 | MeJA induced 9h | 5.897 |
| SRR8749030 | Uninduced | 16.797 |
| SRR8749031 | Uninduced | 16.395 |
| SRR8749032 | Uninduced | 8.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.272 |
| SRR8400027 | Control-Root | 11.959 |