Gene detail information of Glyur000167s00012268.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G20060.13.00E-37ubiquitin-conjugating enzyme19
NRXP_007131564.11.35E-52hypothetical protein PHAVU_011G023800g [Phaseolus vulgaris]
Swissprottr|Q9LJZ5|UBC19_ARATH2.00E-46Ubiquitin-conjugating enzyme E2 19
trEMBLtr|V7AFD5|V7AFD5_PHAVU5.00E-53Uncharacterized protein {ECO:0000313|EMBL:ESW03558.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00167119044120636+


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06688UBE2C, UBC11 EC:2.3.2.23 Ubiquitin mediated proteolysis map04120


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000167s00012268.1PF00179.21UQ_con6831.50E-29


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.116
SRR1783600control8.122
SRR1783602moderate drought stress4.949
SRR1811619moderate drought stress4.478

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.003
DRR006520Root Summer glycyrrhizin high producing strain14.335
DRR006521Root Winter glycyrrhizin high producing strain0.113
DRR006522Root Winter glycyrrhizin high producing strain0.098
DRR006523Root Summer glycyrrhizin low producing strain2.181
DRR006524Root Summer glycyrrhizin low producing strain2.085
DRR006525Leaf Summer glycyrrhizin high producing strain1.979
DRR006526Leaf Summer glycyrrhizin high producing strain1.766

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.543
SRR2868004Drought Stress(Tissue:root)8.612
SRR2967015Control (Tissue:root)10.613

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.445
SRR9715740Leave0.548
SRR9715741Leave1.225
SRR9715739Root5.424
SRR9715742Root2.186
SRR9715743Root2.096

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h44.776
SRR8749028MeJA induced 9h36.792
SRR8749029MeJA induced 9h18.954
SRR8749030Uninduced0.107
SRR8749031Uninduced0.158
SRR8749032Uninduced0.802

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.145
SRR8400027Control-Root20.121

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved