Gene detail information of Glyur000167s00012282.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G08280.12.00E-156hydroxymethylbilane synthase
NRXP_004505653.10PREDICTED: porphobilinogen deaminase, chloroplastic-like [Cicer arietinum]
COGYP_423783.11.00E-107porphobilinogen deaminase [Magnetospirillum magneticum AMB-1]
Swissprottr|Q43082|HEM3_PEA0Porphobilinogen deaminase, chloroplastic (Precursor)
trEMBLtr|G7JQM6|G7JQM6_MEDTR0Porphobilinogen deaminase {ECO:0000313|EMBL:AES89528.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00167197553201463+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01749hemC, HMBS EC:2.5.1.61 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0018160  peptidyl-pyrromethane cofactor linkage

GO:0033014  tetrapyrrole biosynthetic process


molecular_function

GO:0004418  hydroxymethylbilane synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000167s00012282.1PF01379.15Porphobil_deam632783.40E-82
Glyur000167s00012282.1PF03900.10Porphobil_deamC2883601.50E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control46.853
SRR1783600control47.225
SRR1783602moderate drought stress34.953
SRR1811619moderate drought stress34.813

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.523
DRR006520Root Summer glycyrrhizin high producing strain31.256
DRR006521Root Winter glycyrrhizin high producing strain14.956
DRR006522Root Winter glycyrrhizin high producing strain14.796
DRR006523Root Summer glycyrrhizin low producing strain19.107
DRR006524Root Summer glycyrrhizin low producing strain18.695
DRR006525Leaf Summer glycyrrhizin high producing strain49.321
DRR006526Leaf Summer glycyrrhizin high producing strain48.841

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)34.385
SRR2868004Drought Stress(Tissue:root)20.624
SRR2967015Control (Tissue:root)22.201

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave87.970
SRR9715740Leave77.951
SRR9715741Leave79.499
SRR9715739Root25.488
SRR9715742Root28.404
SRR9715743Root29.404

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h47.699
SRR8749028MeJA induced 9h55.912
SRR8749029MeJA induced 9h27.707
SRR8749030Uninduced16.801
SRR8749031Uninduced6.261
SRR8749032Uninduced7.521

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root51.343
SRR8400027Control-Root50.968

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved