Gene detail information of Glyur000167s00012289.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10320.1 | 0 | tRNA synthetase class I (I, L, M and V) family protein |
| NR | XP_004505648.1 | 0 | PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Cicer arietinum] |
| COG | NP_969094.1 | 0 | isoleucyl-tRNA synthetase [Bdellovibrio bacteriovorus HD100] |
| Swissprot | tr|P93736|SYV_ARATH | 1.00E-25 | Valine--tRNA ligase |
| trEMBL | tr|I1LPC3|I1LPC3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G02330.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00167 | 225945 | 242676 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01870 | IARS, ileS | EC:6.1.1.5 | Aminoacyl-tRNA biosynthesis | map00970 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.258 |
| SRR1783600 | control | 18.375 |
| SRR1783602 | moderate drought stress | 18.672 |
| SRR1811619 | moderate drought stress | 18.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.139 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.824 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.150 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.827 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.564 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.498 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.617 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.512 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 43.401 |
| SRR2868004 | Drought Stress(Tissue:root) | 38.674 |
| SRR2967015 | Control (Tissue:root) | 38.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.231 |
| SRR9715740 | Leave | 25.027 |
| SRR9715741 | Leave | 29.748 |
| SRR9715739 | Root | 7.128 |
| SRR9715742 | Root | 34.042 |
| SRR9715743 | Root | 29.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 50.465 |
| SRR8749028 | MeJA induced 9h | 93.824 |
| SRR8749029 | MeJA induced 9h | 37.487 |
| SRR8749030 | Uninduced | 15.369 |
| SRR8749031 | Uninduced | 8.736 |
| SRR8749032 | Uninduced | 13.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 39.730 |
| SRR8400027 | Control-Root | 39.394 |