Gene detail information of Glyur000167s00012290.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G43360.13.00E-175Radical SAM superfamily protein
NRXP_003537735.10PREDICTED: biotin synthase-like [Glycine max]
COGYP_006433483.11.00E-152biotin synthase [Flexibacter litoralis DSM 6794]
Swissprottr|P54967|BIOB_ARATH0Biotin synthase
trEMBLtr|I1LIK7|I1LIK7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G09980.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00167243772248224-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01012bioB EC:2.8.1.6 Biotin metabolism map00780


Gene Ontology

biological_process

GO:0009102  biotin biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0004076  biotin synthase activity

GO:0051536  iron-sulfur cluster binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000167s00012290.1PF04055.16Radical_SAM972557.90E-15
Glyur000167s00012290.1PF06968.8BATS2703625.20E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control71.591
SRR1783600control72.577
SRR1783602moderate drought stress40.043
SRR1811619moderate drought stress40.263

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.237
DRR006520Root Summer glycyrrhizin high producing strain31.024
DRR006521Root Winter glycyrrhizin high producing strain40.819
DRR006522Root Winter glycyrrhizin high producing strain40.014
DRR006523Root Summer glycyrrhizin low producing strain22.414
DRR006524Root Summer glycyrrhizin low producing strain22.609
DRR006525Leaf Summer glycyrrhizin high producing strain27.085
DRR006526Leaf Summer glycyrrhizin high producing strain26.779

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)76.392
SRR2868004Drought Stress(Tissue:root)64.115
SRR2967015Control (Tissue:root)60.124

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.612
SRR9715740Leave29.766
SRR9715741Leave34.461
SRR9715739Root21.501
SRR9715742Root34.812
SRR9715743Root31.932

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h56.624
SRR8749028MeJA induced 9h82.343
SRR8749029MeJA induced 9h33.836
SRR8749030Uninduced72.295
SRR8749031Uninduced32.072
SRR8749032Uninduced29.941

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root64.169
SRR8400027Control-Root64.833

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved