Gene detail information of Glyur000169s00018367.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58610.1 | 1.00E-173 | PHD finger transcription factor, putative |
| NR | XP_004490611.1 | 0 | PREDICTED: uncharacterized protein LOC101506255 [Cicer arietinum] |
| Swissprot | tr|F4KBP5|CHR4_ARATH | 4.00E-08 | Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|G7JZJ8|G7JZJ8_MEDTR | 0 | PHD zinc finger protein {ECO:0000313|EMBL:AES98667.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00169 | 178243 | 184436 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PHD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000169s00018367.1 | PF05641.7 | Agenet | 27 | 106 | 1.10E-08 |
| Glyur000169s00018367.1 | PF00628.24 | PHD | 802 | 844 | 2.70E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.021 |
| SRR1783600 | control | 0.032 |
| SRR1783602 | moderate drought stress | 0.076 |
| SRR1811619 | moderate drought stress | 0.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.061 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.062 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.032 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.029 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.024 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.036 |
| SRR2967015 | Control (Tissue:root) | 0.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.018 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.030 |
| SRR9715743 | Root | 0.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.021 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.018 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.023 |
| SRR8400027 | Control-Root | 0.023 |