Gene detail information of Glyur000169s00018377.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G58620.11.00E-145zinc finger (CCCH-type) family protein
NRXP_003519252.10PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform 1 [Glycine max]
Swissprottr|Q9LUZ4|C3H66_ARATH0Zinc finger CCCH domain-containing protein 66
trEMBLtr|I1JHD2|I1JHD2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G39210.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00169271993275226-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000169s00018377.1PF12796.2Ank_21021977.60E-09
Glyur000169s00018377.1PF00642.19zf-CCCH3013218.80E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.412
SRR1783600control5.436
SRR1783602moderate drought stress4.485
SRR1811619moderate drought stress4.368

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.593
DRR006520Root Summer glycyrrhizin high producing strain3.302
DRR006521Root Winter glycyrrhizin high producing strain16.978
DRR006522Root Winter glycyrrhizin high producing strain16.580
DRR006523Root Summer glycyrrhizin low producing strain7.774
DRR006524Root Summer glycyrrhizin low producing strain7.635
DRR006525Leaf Summer glycyrrhizin high producing strain7.545
DRR006526Leaf Summer glycyrrhizin high producing strain7.629

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.539
SRR2868004Drought Stress(Tissue:root)30.266
SRR2967015Control (Tissue:root)23.746

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave26.214
SRR9715740Leave24.585
SRR9715741Leave49.787
SRR9715739Root24.758
SRR9715742Root22.402
SRR9715743Root23.508

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.619
SRR8749028MeJA induced 9h31.994
SRR8749029MeJA induced 9h22.066
SRR8749030Uninduced29.436
SRR8749031Uninduced31.997
SRR8749032Uninduced44.203

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.448
SRR8400027Control-Root11.388

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved