Gene detail information of Glyur000170s00010997.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06550.1 | 0 | |
| NR | XP_004494286.1 | 0 | PREDICTED: F-box protein At5g06550-like [Cicer arietinum] |
| COG | YP_004752438.1 | 1.00E-15 | hypothetical protein CFU_1783 [Collimonas fungivorans Ter331] |
| Swissprot | tr|Q67XX3|FB252_ARATH | 0 | F-box protein At5g06550 |
| trEMBL | tr|I1NAX4|I1NAX4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G39010.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00170 | 74440 | 77008 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Jumonji |
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000170s00010997.1 | PF12937.2 | F-box-like | 99 | 138 | 8.50E-06 |
| Glyur000170s00010997.1 | PF13621.1 | Cupin_8 | 214 | 434 | 4.30E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.339 |
| SRR1783600 | control | 4.308 |
| SRR1783602 | moderate drought stress | 4.633 |
| SRR1811619 | moderate drought stress | 4.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.866 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.066 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.871 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.590 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.871 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.837 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.036 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.695 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.394 |
| SRR2967015 | Control (Tissue:root) | 5.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.007 |
| SRR9715740 | Leave | 6.319 |
| SRR9715741 | Leave | 2.361 |
| SRR9715739 | Root | 2.164 |
| SRR9715742 | Root | 4.775 |
| SRR9715743 | Root | 4.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.531 |
| SRR8749028 | MeJA induced 9h | 2.924 |
| SRR8749029 | MeJA induced 9h | 2.379 |
| SRR8749030 | Uninduced | 0.171 |
| SRR8749031 | Uninduced | 0.246 |
| SRR8749032 | Uninduced | 0.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.371 |
| SRR8400027 | Control-Root | 5.529 |