Gene detail information of Glyur000170s00011004.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G33270.10Transducin family protein / WD-40 repeat family protein
NRXP_004494277.10PREDICTED: anaphase-promoting complex subunit cdc20-like [Cicer arietinum]
COGYP_001865069.14.00E-28hypothetical protein Npun_F1419 [Nostoc punctiforme PCC 73102]
Swissprottr|Q9SZA4|CDC21_ARATH0Cell division cycle 20.1, cofactor of APC complex
trEMBLtr|A0A072U570|A0A072U570_MEDTR0Transducin family protein/WD-40 repeat protein {ECO:0000313|EMBL:KEH24293.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00170107161109256+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000170s00011004.1PF00400.27WD401692003.00E-05
Glyur000170s00011004.1PF00400.27WD402072370.066
Glyur000170s00011004.1PF00400.27WD402492849.10E-11
Glyur000170s00011004.1PF00400.27WD402983350.00016
Glyur000170s00011004.1PF00400.27WD403864206.80E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.329
SRR1783600control13.354
SRR1783602moderate drought stress19.190
SRR1811619moderate drought stress19.462

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.940
DRR006520Root Summer glycyrrhizin high producing strain14.216
DRR006521Root Winter glycyrrhizin high producing strain18.828
DRR006522Root Winter glycyrrhizin high producing strain18.146
DRR006523Root Summer glycyrrhizin low producing strain12.728
DRR006524Root Summer glycyrrhizin low producing strain12.487
DRR006525Leaf Summer glycyrrhizin high producing strain20.528
DRR006526Leaf Summer glycyrrhizin high producing strain20.808

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)36.538
SRR2868004Drought Stress(Tissue:root)27.005
SRR2967015Control (Tissue:root)25.781

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.778
SRR9715740Leave9.195
SRR9715741Leave4.480
SRR9715739Root3.243
SRR9715742Root2.783
SRR9715743Root2.632

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h34.069
SRR8749028MeJA induced 9h23.198
SRR8749029MeJA induced 9h25.061
SRR8749030Uninduced6.769
SRR8749031Uninduced3.108
SRR8749032Uninduced6.357

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.331
SRR8400027Control-Root19.627

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved