Gene detail information of Glyur000170s00011016.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G22030.20ubiquitin-specific protease 8
NRXP_004494262.10PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Cicer arietinum]
COGYP_007675.12.00E-08hypothetical protein pc0676 [Candidatus Protochlamydia amoebophila UWE25]
Swissprottr|Q9C585|UBP8_ARATH0Ubiquitin carboxyl-terminal hydrolase 8
trEMBLtr|K7MZC5|K7MZC5_SOYBN0Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00170177190184000-


Gene family

Gene familysubfamily
Ubiquitin FamilyUSP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process


molecular_function

GO:0036459  thiol-dependent ubiquitinyl hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000170s00011016.1PF00443.24UCH3319241.00E-82


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.591
SRR1783600control5.660
SRR1783602moderate drought stress7.796
SRR1811619moderate drought stress7.820

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.934
DRR006520Root Summer glycyrrhizin high producing strain8.891
DRR006521Root Winter glycyrrhizin high producing strain11.735
DRR006522Root Winter glycyrrhizin high producing strain11.199
DRR006523Root Summer glycyrrhizin low producing strain10.152
DRR006524Root Summer glycyrrhizin low producing strain10.143
DRR006525Leaf Summer glycyrrhizin high producing strain6.263
DRR006526Leaf Summer glycyrrhizin high producing strain6.247

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.273
SRR2868004Drought Stress(Tissue:root)14.257
SRR2967015Control (Tissue:root)13.710

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.396
SRR9715740Leave13.274
SRR9715741Leave15.100
SRR9715739Root1.659
SRR9715742Root9.784
SRR9715743Root7.954

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.470
SRR8749028MeJA induced 9h12.100
SRR8749029MeJA induced 9h8.408
SRR8749030Uninduced10.258
SRR8749031Uninduced7.218
SRR8749032Uninduced4.960

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.891
SRR8400027Control-Root9.975

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved