Gene detail information of Glyur000170s00011024.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06510.2 | 2.00E-55 | nuclear factor Y, subunit A10 |
| NR | AFK37452.1 | 0 | unknown [Lotus japonicus] |
| Swissprot | tr|Q8LFU0|NFYAA_ARATH | 3.00E-66 | Nuclear transcription factor Y subunit A-10 |
| trEMBL | tr|I3SB10|I3SB10_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK37452.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00170 | 227175 | 232098 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000170s00011024.1 | PF02045.10 | CBFB_NFYA | 166 | 222 | 4.90E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 39.525 |
| SRR1783600 | control | 39.741 |
| SRR1783602 | moderate drought stress | 42.333 |
| SRR1811619 | moderate drought stress | 42.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.071 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.888 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.403 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.343 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.934 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.930 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.623 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 60.017 |
| SRR2868004 | Drought Stress(Tissue:root) | 56.133 |
| SRR2967015 | Control (Tissue:root) | 105.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.773 |
| SRR9715740 | Leave | 13.732 |
| SRR9715741 | Leave | 9.822 |
| SRR9715739 | Root | 47.113 |
| SRR9715742 | Root | 27.533 |
| SRR9715743 | Root | 31.522 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.445 |
| SRR8749028 | MeJA induced 9h | 4.164 |
| SRR8749029 | MeJA induced 9h | 3.772 |
| SRR8749030 | Uninduced | 2.187 |
| SRR8749031 | Uninduced | 0.902 |
| SRR8749032 | Uninduced | 1.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 88.505 |
| SRR8400027 | Control-Root | 79.049 |